Gene detail

Detail information of GWHGAAZE011743

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279386.1	0	PREDICTED: ras guanine nucleotide exchange factor L [Vitis vinifera]
Swissprot	tr\|Q39008\|M3K1_ARATH	5E-18	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|D7T747\|D7T747_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26318.3}
TAIR10	AT1G04210.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	72455480	72470472	-
GWHAAZE00000003	mRNA	72455480	72470472	-
GWHAAZE00000003	exon	72455480	72455566	-
GWHAAZE00000003	exon	72457113	72457214	-
GWHAAZE00000003	exon	72457912	72458262	-
GWHAAZE00000003	exon	72462041	72462268	-
GWHAAZE00000003	exon	72462918	72463074	-
GWHAAZE00000003	exon	72463803	72463984	-
GWHAAZE00000003	exon	72464384	72464813	-
GWHAAZE00000003	exon	72465605	72466184	-
GWHAAZE00000003	exon	72466644	72466803	-
GWHAAZE00000003	exon	72467018	72467282	-
GWHAAZE00000003	exon	72468444	72468549	-
GWHAAZE00000003	exon	72468656	72468705	-
GWHAAZE00000003	exon	72469613	72470472	-
GWHAAZE00000003	five_prime_UTR	72470110	72470472	-
GWHAAZE00000003	CDS	72469613	72470109	-
GWHAAZE00000003	CDS	72468656	72468705	-
GWHAAZE00000003	CDS	72468444	72468549	-
GWHAAZE00000003	CDS	72467018	72467282	-
GWHAAZE00000003	CDS	72466644	72466803	-
GWHAAZE00000003	CDS	72465605	72466184	-
GWHAAZE00000003	CDS	72464384	72464813	-
GWHAAZE00000003	CDS	72463803	72463984	-
GWHAAZE00000003	CDS	72462918	72463074	-
GWHAAZE00000003	CDS	72462041	72462268	-
GWHAAZE00000003	CDS	72457912	72458262	-
GWHAAZE00000003	CDS	72457113	72457214	-
GWHAAZE00000003	CDS	72455480	72455566	-

Transcript Sequence
>GWHTAAZE011755 GTTCTTTTTCTATCTCTAATAACTCAAGTTTACGCCCTCGGCCCCATTCTCTCCTTCCCAATTCTCCTCATCGCACTCTCTTCCAATCCTCTCTTTGACATATTCACACAAAAATACATGAAACCCTAAACTCCCCACAAAATCTCAAACCCTAACCCTAACGAACACTTCAATCCCTCCCCTCTCTAAGTTTACCAATTTCGTGTATATTTCACTGTCGAATCATATATACTCAACCCTAACTTACTCCAAAATCCCAAACCCTAACGCGCACCTTCAATCTCTCTTTCCCTCTCTCTCCCGAAATTTGTTAATTTCATCTCCAATTCACCGGAGAATCATAGGTGAAGTGCTCAAAACCCAATGCAGGTCGTCGATTCGGACCAAACACCACTTCCGAATGACGATCCGCCGATTGAAGAGGCGAAATCGGAAGAATTGAAAGATACGGAGACGAATTCGAGTGATTACGACTCCGTAATCGATGTTTCAGGCAAAATATTGGATTTTCCGGTTTTGGATGCGAGTGAGGGTTCAATTGAGGGGCTTTATTTGTATAAGAATGTGTTTAATTTGATTCCGAGGTCGGTTGGGGGACTAGGGAGGTTGAAGAAGTTGAAATTCTTTGCGAATGAGATCAATTTATTTCCGCCGGAGTTTAGGAATTTGGTTGACCTTGAGTCTATACAAGTGAAGATATCTTCGCCGGGTTTGACTGGCTTGCCTTTGCACAAGTTGAAGGCCTTGAAGGAGCTTGAGCTTTGTAAGGTGCCTCCAAGGCCTTCGGCGTTTCCGATTTTGAGTGAAATTGCAGACCTTAAGCGCTTGACTAAGCTCTCTGTTTGTCATTTTTCTATCAGGCAGCTAAGCTGCTATGAATTCAAGGGCAGGGTTGTGGGCATGTGGCCAGATGAAGAAGAAGAATGGCCACTAGGAGTTAGATTGGAGAGCGTGGATGGGAAGAGTTTTGCAGGAAGAGCCTCCATTAAGGTTTATGTTTTGCATGTGATGGGAAGATACTTGCCTCCAGAAATTGGCTGCCTTAGTAGTTTGGAGTATCTAGACCTTTCCTTTAATAAGATGAGGAGTTTGCCAACTGTTATAACCTATTTGGATGCCCTGATATCATTGAAAGTTGCTAATAATAAATTGGTTGAACTACCTCCAAGATTGTCCTCTCTGCAAAGATTGGAGAGCTTGGACTTGTCAAACAATAGATTGACTTCATTGGGCTGTCTCGATATTGACTCAATGCACAACCTTCAGACATTAAATCTTCAGTATAATAAGCTTCCCAGCTCTTTTCAAGTCCCTTCATGGATATGCTGTGACCTGGATGGAAATTGCAAAGACACGTCCAATGACGAAATCATCAGTTCATGCGCAGAAATGGATGTACTTGAAAGTGTCATTGAGGAGTCTCACGATAGTCCTAGAAATGATCTAGGCTTGCCTATCACCCCATCAAGCCATCTAACAGGATCTTCATCGAGCAGTAGAAGTTTTGCGGCACGAAAGTCTGGCAAGGGATGGAAACGGCGGTATTATTTGCAACAGAGAGCTCGTCAGGAGCGTCTGAACAGCAGTAGGAAGTGGAAAGGTGAAGACCACCCCGAGGTTTTATCTAAAAAACCAGCGGAGAAGTGCAAACCGTGCAAACTTGCTGTCCTTTCCTCGAATTCTGGGTCAAAAGTTTCAACGGGTCCCGGCATTGATAATAAAGAGTCACTTGCTGGAGAATCTGACTGTGAAAACTCACTTATTATTGTTGAGGACGATGATATCAGCTCGAACAAGGAGGATTATGTGGAGAACTGCTCGTGTGTTGCATCAGAATCTGTTGAATTGCATAAAGGTGGTGGAAATGGCTGTTTAGAGCATGATGTTCATGATGATAGCTCATCTTTGGAAGTTTCGAATAGCGTTCCGAAGACAAAACGACATCCCGAGGGGGACCTTGCCAATCCCAAACCAAGCAAATACCAGAAACCAGCCGACGACCACGTAGATATATCTTTCAAGGAAAAGGATGAGGAGTTAGATGCCATAGCACTGTGTGCTCAAGCTTTAGTGTTTCACTTTAAACAGATTAATGGTTCAAGCAAAGGAAGGGGACAGATTGGGATTGATAACTTGCAGGTTGCATCACTGCTTGCTCTTTTTGTATCAGATCACTTCGGAGGCAGTGATAGAAGTTCAAACCTTGTGAGGACACGAAAATCTGTATCGGGTTCAAACTATAGAAAGCCTTTTGTTTGTTCTTGCGCAACTGGAAACAGTGACAGTATTAGGGAATTCAGGAAAGAAGGCTTGGGCACTGTAGAAGATATTGTTTTGCTCGATGTCTGTGAGAGATCTCTCCAATGTATAAAAGCAAGAAGAAATTCCATAGTTGTTCCAATTGGGACTCTGCAGTTTGGTGTGTGTAGACATAGAGCATTGCTCATGAAGTACCTATGTGACCGGATGGAGCCTCGAGTACCGTGTGAACTTGTTAGGGGCTATTTAGATTTCTCACCACATGCCTGGAATGTAGTTGTTATCAAGAGGGGCGACTCATGGATTCGCATGATCGTTGATGCATGCCGGCCCCTCGATATAAGAGAAGAGACTGACCCTGAATATTTTTGCAGATATATTCCTCTCAGTCGTATTAATGTTTCTCCTACAATAGATAGTGATCCTGGTCCACTTTCATTTCCCTCTCTTTCTGCATGTGATGAAATTGGAAAAGCAGCATCTACTACTCTCCTCCAGTGCAAATTTGGATCGGTTGAGGCTGTAGCTAAGGTGCGTAATTTAGAAGCATGTGGGACATCTCCTGAAGAAATTAAGAATTTTGAGTTCACTTGCATAGGGGAAGTAAGAATGTTATGTGCTCTGAAGCATCCCTGTATCGTAGAAATTTATGGTCACCAGATATCTTCCAAGTGGGTCCCATCATCAGATGGAAATACAGAGCATCGTATAGTACAGTCTGCTATATTGATGGAGTACATTGAAGGCGGGTCCTTAAAGAAATATATAGAGAAACTATCTAGAGACGGAGAGAAGCATGTCCCTATAGAATTGGCATTGCATATTGCTAGGGATGTCGCACATGCATTGTCGGAGCTGCATTCTAAAGACATTATTCATCGTGATGTAAAGAGTGGAAACATTTTGATTAGTCTCGATAGGAAGAGATCTGATGGAACACCTATAGTCAAGCTCTGCGATTTTGATAGAGCTGTTCCCCTTCGTTCTTTCTTGCATACATGCTGTATCAATCATCGTGGAATACATCCACCTGATATCTGTGTCGGCACACCTCGATGGATGGCTCCTGAGGTTTTTCGGACCATGCATGAACGCAAATTTTATGGCCTCGAAGTGGACATTTGGTCATTTGGGTGCCTGCTTTTGGAATTGTTGACGCTGCAAGCCCCTTATTCAGGCTTGCCAGAATCTACCATTCATGATCTTCTTCGGATGGGAAAACGTCCGCGGCTAACAAAAGAGTTGGAATCTTTGGGTCCTCGAGAGGATCCGAAAATGGTTCAATCCGCCCAGAGGTAG

Network for GWHGAAZE011743

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	253	310	2.70E-07
PF14381.7	EDR1	663	739	2.30E-12
PF00069.26	Pkinase	824	1030	1.90E-31

Protein Sequence

>GWHPAAZE011749
MQVVDSDQTPLPNDDPPIEEAKSEELKDTETNSSDYDSVIDVSGKILDFPVLDASEGSIEGLYLYKNVFNLIPRSVGGLGRLKKLKFFANEINLFPPEFRNLVDLESIQVKISSPGLTGLPLHKLKALKELELCKVPPRPSAFPILSEIADLKRLTKLSVCHFSIRQLSCYEFKGRVVGMWPDEEEEWPLGVRLESVDGKSFAGRASIKVYVLHVMGRYLPPEIGCLSSLEYLDLSFNKMRSLPTVITYLDALISLKVANNKLVELPPRLSSLQRLESLDLSNNRLTSLGCLDIDSMHNLQTLNLQYNKLPSSFQVPSWICCDLDGNCKDTSNDEIISSCAEMDVLESVIEESHDSPRNDLGLPITPSSHLTGSSSSSRSFAARKSGKGWKRRYYLQQRARQERLNSSRKWKGEDHPEVLSKKPAEKCKPCKLAVLSSNSGSKVSTGPGIDNKESLAGESDCENSLIIVEDDDISSNKEDYVENCSCVASESVELHKGGGNGCLEHDVHDDSSSLEVSNSVPKTKRHPEGDLANPKPSKYQKPADDHVDISFKEKDEELDAIALCAQALVFHFKQINGSSKGRGQIGIDNLQVASLLALFVSDHFGGSDRSSNLVRTRKSVSGSNYRKPFVCSCATGNSDSIREFRKEGLGTVEDIVLLDVCERSLQCIKARRNSIVVPIGTLQFGVCRHRALLMKYLCDRMEPRVPCELVRGYLDFSPHAWNVVVIKRGDSWIRMIVDACRPLDIREETDPEYFCRYIPLSRINVSPTIDSDPGPLSFPSLSACDEIGKAASTTLLQCKFGSVEAVAKVRNLEACGTSPEEIKNFEFTCIGEVRMLCALKHPCIVEIYGHQISSKWVPSSDGNTEHRIVQSAILMEYIEGGSLKKYIEKLSRDGEKHVPIELALHIARDVAHALSELHSKDIIHRDVKSGNILISLDRKRSDGTPIVKLCDFDRAVPLRSFLHTCCINHRGIHPPDICVGTPRWMAPEVFRTMHERKFYGLEVDIWSFGCLLLELLTLQAPYSGLPESTIHDLLRMGKRPRLTKELESLGPREDPKMVQSAQR

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.808
	SRR3591706	second leaf	13.385
	SRR3591707	mature leaf	10.201
	SRR3591708	Shoot apex	18.525
	SRR3591709	Stem	12.867
	SRR3591710	White floral bud	16.145
	SRR3591711	White flower	18.714
	SRR3591712	Green floral bud	13.562
	SRR3591713	Yellow flower	12.861
SRP173429	SRR8316895	Juvenile bud stage	9.490
	SRR8316896	Juvenile bud stage	12.106
	SRR8316897	Juvenile bud stage	5.856
	SRR8316894	Third green stage	5.229
	SRR8316900	Third green stage	11.097
	SRR8316901	Third green stage	10.441
	SRR8316898	Complete white stage	3.046
	SRR8316899	Complete white stage	10.280
	SRR8316903	Complete white stage	8.476
	SRR8316902	Silver flowering stage	5.142
	SRR8316904	Silver flowering stage	7.635
	SRR8316905	Silver flowering stage	2.670
	SRR8316906	Gold flowering stage	8.932
	SRR8316907	Gold flowering stage	7.952
	SRR8316908	Gold flowering stage	8.857
SRP132670	SRR6706286	Control	8.834
	SRR6706287	Light intensity 50%	8.818
	SRR6706288	Light intensity 20%	9.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.506
	CNS0095593	Slightly white alabastrum(diploid) 2	4.759
	CNS0095594	Slightly white alabastrum(diploid) 3	4.373
	CNS0095595	Whole white alabastrum(diploid) 2	4.808
	CNS0095596	Whole white alabastrum(diploid) 3	3.996
	CNS0095597	Whole white alabastrum(diploid) 4	4.094
	CNS0095598	Silvery flower (diploied) 1	7.827
	CNS0095599	Silvery flower (diploied) 2	7.378
	CNS0095600	Silvery flower (diploied) 3	12.660
	CNS0095601	Golden flower (diploid) 1	7.013
	CNS0095602	Golden flower (diploid) 2	13.472
	CNS0095603	Golden flower (diploid) 3	12.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.472
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.432
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.962
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.638
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.271
	CNS0095610	Silvery flower (tetraploid) 1	9.932
	CNS0095611	Silvery flower (tetraploid) 2	8.947
	CNS0095612	Silvery flower (tetraploid) 3	8.708
	CNS0095613	Golden flower (tetraploid) 1	4.506
	CNS0095614	Golden flower (tetraploid) 2	8.613
	CNS0095615	Golden flower (tetraploid) 3	9.283
CRA001975	CRR073297	Stem 1	12.434
	CRR073298	Stem 2	11.881
	CRR073299	Stem 3	10.447
	CRR073300	Leaf 1	8.844
	CRR073301	Leaf 2	8.079
	CRR073302	Leaf 3	5.974
	CRR073303	Juvenile bud 1	6.018
	CRR073304	Juvenile bud 2	3.909
	CRR073305	Juvenile bud 3	9.751
	CRR073306	Third green 1	4.373
	CRR073307	Third green 2	3.152
	CRR073308	Third green 3	4.586
	CRR073309	Second white 1	4.302
	CRR073310	Second white 2	5.719
	CRR073311	Second white 3	5.636
	CRR073312	Silver flowering 1	7.108
	CRR073313	Silver flowering 2	8.161
	CRR073314	Silver flowering 3	6.348
	CRR073315	Gold flowering 1	3.254
	CRR073316	Gold flowering 2	5.914
	CRR073317	Gold flowering 3	3.863
	CRR073318	Tawny withering 1	8.841
	CRR073319	Tawny withering 2	8.951
	CRR073320	Tawny withering 3	9.976