Gene detail

Detail information of GWHGAAZE011709

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14018.1	1.5562E-158	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	5E-139	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|A0A068V294\|A0A068V294_COFCA	6E-159	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP14018.1}
TAIR10	AT3G55950.1	8E-113	CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71809116	71812142	+
GWHAAZE00000003	mRNA	71809116	71812142	+
GWHAAZE00000003	exon	71809116	71810310	+
GWHAAZE00000003	exon	71811043	71812142	+
GWHAAZE00000003	CDS	71809116	71810310	+
GWHAAZE00000003	CDS	71811043	71812142	+

Transcript Sequence
>GWHTAAZE011721 ATGATGCCGATACCAGTTCCGCCACTGCCGGAGCACTTAAACAAGCTGCCGTTGGATCCGCCGGAGCCATTTTGCCATCCCTTCTCCCTTGCTGAGATCTTATCCGGGACTCACAACTTTGACGAGTCATTGGTTATCGGGCAGGGCGGATTCGGTAAAGTATACAAAGGGGTCATTGACAACGAGACAAGTGTTGTTGCTGTAAAAAGGCTGAGTTCCACTTCCAAGCAAGGAGATTCTGAATTCAGAACCGAGATTGAAATGCTTTCAAAACTTCGACACACTCATATTGTGTCTCTGATCGGTTATTGTTACAGTTCTACTGAGATGGTACTTGTTTATGAATATATGGTCAACGGGTCTCTAGCGGATCATTTGTACAAAACTGGCAAGTATCGTGGTGGTCCTGCTTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTCCATACAGGTACTGGTGTTATACATCGTGATGTTAAGAGTTCGAACATCCTGTTAGACAAAAATTGTGCAGCTAAAGTTTCAGACTTCGGGTTGTCTAGAATAAGCCCAATTGATCAGTCATGCACTCATATCAGCACAAATGTTAAAGGGACAACGGGGTATATGGATCCAGAATATCTGTTGACCCTCAAATTGACCATGAAATCCGATGTCTACTCTTTTGGGGTTGTATTATTTGAAGTGTTGTGTGGAAGGCAAGCGGTGGATTTAAGGCTTGATGACGAGCAATGGAGTCTTGCTAGGTGGGCCCAACACTGTATTGAAAAAGGAACACTTCATCAGATTATTGATCCTAATTTGAGGTGGGAAATTTTGCCCGAGTCTTATACAGAATTTGCACGAATTGCAAATCAATGCTTATGTTATCAGTCGAAAAAACGTCCTACGATGACTCAAGTTGTGGCGTCACTCGAGTTAGCCTTGGCATTGCAATTAGGACATAAAGATACTTCTGCATTTGAAATGGAGTTAGTTTGTACAAGTGAGGCACCTGAAAACATAGAGAAGGTTGATTCAAAAATGGTGCAAGAAATGGCTATCAAATTTGGGAGTTGTGATGAGGATAATAAAGATATCCGGCGGTCTCAAGTGAAGCCTACCAAAAGAAAGGCACTCAGAAAAATGTTGCAACTGCTTATGTTTCGCACAGTTCGTGAGGCACCAGTAGCCCAGCTTCAAGATCCTCCACCAGTAGATGGCAGAACTCGAGAAGGTTCAGGCGTCAAATTAAGGAGCGGCACCTCAAAAACACATATAGATAGGCCCGAAGAATTCTTGTTTTCAGACCTTGCTGCGGCCACCAACAATTTCTCCCTGGAGAACAAGATTGGTGCTGGTAGCTTTGGGAAAGTGTACAAAGGCAAACTACTAGATGGACGAGAGGTCGCTATTAAAAGGGAAGAGATGGCCAGTTCAAAGACGAAGAAATTTCTTCGAGAGAAAGAGAGCAGCAGCGCATTTGATTCAGAATTGGCTTCCTTATCTAGGGTTCATCACAAAAACCTGGTTAGGCTAGTTGGGTTTTGCGAATCAGGGAGGGACGAGGAGAGGCTCTTAGTTTATGAATACATGAAAAATGAAGGACTTTACCATCGTTTGCACGACAAGAACAATGTGGAAAAGAGTAGCAGTCCCTTAAATTCTTGGAAGATGAGGATCAAAATATCATTAGACGCTGCACGTGGCATCGAATACCTGCACAACTACGCAGTTCCTCCTATAATTCATCGAGACATCAAGTCTTCTAATATATTACTGGACGCAAATTGGACTGCAAGAGTATCTGATTTTGGATTATCAATGATATTAATGGGACCAGAAACTGATTATAGTTCGACCAGGACAGTTGGGACAATTGGGTACATGGACCCAGGTTACTTTAGACTAAATGTGTTGACAACAGAGAGTGATGTATATAGTCTTGGAGTCGTGTTGCTAGAGCTCTTGACAGGGAAGAGGGCTATATTTAAGAATGGGGAAGATGGTGTTCCAACTAATGTAGTGGATTTTGCAGTACCAGCCATTATAGCCGGAGAATTGCCCAAGGTTTTGGACCCGAGGGTTGGATCGCAGCTGGAGGAGAATGAAGCAGAGGCAGTAGAGCTAGTTGCTTATACCGCAATTCACTGTGTGAATTTGGAAGGGAGAGAGAGACCTACCATGGCTGACATTGTGGCGAATTTGGAGCGAGCGTTGGCTTTATGTGGTAATAATAGCCATGGCAGCAGCATCTCTAGTGGCTCAATCTCCATTGATTCAGATTAA

Network for GWHGAAZE011709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	312	5.00E-53
PF00069.26	Pkinase	448	735	7.80E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.018
	SRR3591706	second leaf	0.982
	SRR3591707	mature leaf	1.359
	SRR3591708	Shoot apex	2.690
	SRR3591709	Stem	12.788
	SRR3591710	White floral bud	4.471
	SRR3591711	White flower	5.518
	SRR3591712	Green floral bud	2.101
	SRR3591713	Yellow flower	2.543
SRP173429	SRR8316895	Juvenile bud stage	3.269
	SRR8316896	Juvenile bud stage	1.712
	SRR8316897	Juvenile bud stage	0.764
	SRR8316894	Third green stage	1.278
	SRR8316900	Third green stage	1.525
	SRR8316901	Third green stage	1.858
	SRR8316898	Complete white stage	0.051
	SRR8316899	Complete white stage	4.565
	SRR8316903	Complete white stage	0.205
	SRR8316902	Silver flowering stage	0.361
	SRR8316904	Silver flowering stage	0.505
	SRR8316905	Silver flowering stage	0.143
	SRR8316906	Gold flowering stage	1.123
	SRR8316907	Gold flowering stage	1.157
	SRR8316908	Gold flowering stage	0.616
SRP132670	SRR6706286	Control	0.766
	SRR6706287	Light intensity 50%	0.761
	SRR6706288	Light intensity 20%	0.713
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.819
	CNS0095593	Slightly white alabastrum(diploid) 2	3.190
	CNS0095594	Slightly white alabastrum(diploid) 3	2.898
	CNS0095595	Whole white alabastrum(diploid) 2	1.455
	CNS0095596	Whole white alabastrum(diploid) 3	0.486
	CNS0095597	Whole white alabastrum(diploid) 4	2.089
	CNS0095598	Silvery flower (diploied) 1	6.152
	CNS0095599	Silvery flower (diploied) 2	5.837
	CNS0095600	Silvery flower (diploied) 3	2.925
	CNS0095601	Golden flower (diploid) 1	8.340
	CNS0095602	Golden flower (diploid) 2	4.547
	CNS0095603	Golden flower (diploid) 3	4.597
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.181
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.608
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.374
	CNS0095610	Silvery flower (tetraploid) 1	0.250
	CNS0095611	Silvery flower (tetraploid) 2	0.118
	CNS0095612	Silvery flower (tetraploid) 3	0.272
	CNS0095613	Golden flower (tetraploid) 1	0.130
	CNS0095614	Golden flower (tetraploid) 2	0.070
	CNS0095615	Golden flower (tetraploid) 3	0.007
CRA001975	CRR073297	Stem 1	0.691
	CRR073298	Stem 2	0.617
	CRR073299	Stem 3	0.640
	CRR073300	Leaf 1	1.046
	CRR073301	Leaf 2	1.102
	CRR073302	Leaf 3	0.515
	CRR073303	Juvenile bud 1	0.540
	CRR073304	Juvenile bud 2	0.465
	CRR073305	Juvenile bud 3	1.811
	CRR073306	Third green 1	0.140
	CRR073307	Third green 2	0.039
	CRR073308	Third green 3	0.239
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.370
	CRR073311	Second white 3	0.147
	CRR073312	Silver flowering 1	0.465
	CRR073313	Silver flowering 2	0.386
	CRR073314	Silver flowering 3	0.073
	CRR073315	Gold flowering 1	1.119
	CRR073316	Gold flowering 2	2.081
	CRR073317	Gold flowering 3	1.083
	CRR073318	Tawny withering 1	3.380
	CRR073319	Tawny withering 2	3.594
	CRR073320	Tawny withering 3	3.304