Gene detail

Detail information of GWHGAAZE011707

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	3.2841E-112	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	7E-102	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	1E-112	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	6E-91	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71793960	71796571	+
GWHAAZE00000003	mRNA	71793960	71796571	+
GWHAAZE00000003	exon	71793960	71795099	+
GWHAAZE00000003	exon	71795176	71795246	+
GWHAAZE00000003	exon	71796015	71796571	+
GWHAAZE00000003	five_prime_UTR	71793960	71793966	+
GWHAAZE00000003	CDS	71793967	71795099	+
GWHAAZE00000003	CDS	71795176	71795246	+
GWHAAZE00000003	CDS	71796015	71796571	+

Transcript Sequence
>GWHTAAZE011719 CAGAGTGATGATGGCTGTACCGGTAACACCACTGCCGGAGCACGTCAACACGCTGCCGTTGCCTTTGTCGGAGCAATTATGCCGTCCCTTCTCCTTTGCCGAGATCTTATCCGCAACTAACAACTTCGACGATTCATTGGTTATTGGGCAAGGCGGATTTGGTAAAGTATACAAAGGGGTCATCGACAACGGGGCAAGTATCGTTGCTATTAAACGGCTAAGCTCTGCGTCTAATCAAGGAGATTCCGAATTCAGAACCGAGATTGAGATGCTCTCAAAATTTCGGCACTCTCATATTGTGTCTTTAATTGGTTACTGTTATAGTTCCACTGAGATGATCCTTGTCTATGAACATATGGTCAACGGGTCTCTAGCGGATCACTTGCACAAAATTGGCAAGTATGGTACTAGTTCTGATTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTCCATACAGGTACTGGTGTCATACATCGGGATATGAAGACTTCGAACATCCTGTTAGATAAGAATTGCGCAGCTAAAGTTTCAGACTTTGGTTTGTCTAGAATCAACCCAATTGATCAGTGTTGCACTCATATCACCACAAATGTAAAAGGGACAACGGGGTATATGGATCCAGAATATATGTTGACCTTCCGATTGACAATGAAATCCGATGTCTACTCTTTTGGGGTTGTACTATTTGAAGTGTTGTGCGGAAGGCGAGCGGTGGATTTTACACTTGATGAAGAGCAATGGAGTCTTGCTAGGTGGGCCCAATGCTGTATTGAAAACGGAACGCTTCATCGTACTATCAATCCTAATTTGTGGTCGGAAATCTTGCCTGAATCTTTGAAAGAGTTTGTGCGAATTGCAAATCAATGCTTATGTTATCGGCCGAAAAAACGACCTACAATGACTCAGGTCGTGAGCTCTCTCGAGTTGGCGTTGGCATTGCAGCTAGGACACAAAGATTCTTCTGCATTTGAAATGGAAATTATTTGTACAACTGAGGCAGATGAAATCATAGAAAATGCTGACTCAACAATGGTACAAGAAGAAAGGCAATCGTTTACGTTCTCGACAGGTAAGACCATACTGATTATGTATTATGTAAGCAATGCTACTCGACTCAAAAATAAACGTGGTTCAAATTTATTTAAGATACAAGTTACAAAGCATTTTTCTGATTATGCAATAGATTCTCCTCATTTACCGCCAGTTCTTGAAGAGGCTTCTTCCTCCTCTTCCGTGCCTACAGATGATGGTCCATTACCTGCAATAGAGGGCCTCCAAATTTCTGGTGAACCTTTTCTGGGACGGGAGCTACAAGCAAGCGGGTATTCTATTAATGGAACAACAAGTTGTAACTTTATTTGGGTGCGCCATTCAGAAGATGGCTCTGTTAAGTACATAGATGGGGCAACACAACCAAGCTATCTTGTTACCGCTGATGATGTTGATACAACCCTTGCTGTTGAAGTCCAGCCGTTGGATGACAGAAACCGAAAAGGTGAACTTGTAAAGGTCTTTGCCAATGAGGATAGAAAGATCACTTGTGATTCGGAATTGCAAAACCACCTACTGGAGAACCTTTATAACGGCCATGCTACATATAAGGTAACCATGTCTATGAGATATATGGGGATATGGGAGCCAGCTACTTTGTTGATCAAGCAGGAAGGTTATAGCATCAAGCGTAGTAGACCCAATGCTGCTATAGTCATTGAGAAATTCTCACCGTCCACAATAGTTAAA

Network for GWHGAAZE011707

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	45	312	9.70E-52

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.568
	SRR3591706	second leaf	1.389
	SRR3591707	mature leaf	1.626
	SRR3591708	Shoot apex	3.065
	SRR3591709	Stem	5.690
	SRR3591710	White floral bud	4.094
	SRR3591711	White flower	8.983
	SRR3591712	Green floral bud	3.154
	SRR3591713	Yellow flower	5.460
SRP173429	SRR8316895	Juvenile bud stage	8.997
	SRR8316896	Juvenile bud stage	7.496
	SRR8316897	Juvenile bud stage	0.288
	SRR8316894	Third green stage	4.052
	SRR8316900	Third green stage	8.281
	SRR8316901	Third green stage	11.740
	SRR8316898	Complete white stage	3.150
	SRR8316899	Complete white stage	22.115
	SRR8316903	Complete white stage	4.298
	SRR8316902	Silver flowering stage	3.878
	SRR8316904	Silver flowering stage	4.205
	SRR8316905	Silver flowering stage	2.201
	SRR8316906	Gold flowering stage	11.031
	SRR8316907	Gold flowering stage	8.006
	SRR8316908	Gold flowering stage	3.030
SRP132670	SRR6706286	Control	6.602
	SRR6706287	Light intensity 50%	6.073
	SRR6706288	Light intensity 20%	6.568
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.352
	CNS0095593	Slightly white alabastrum(diploid) 2	5.953
	CNS0095594	Slightly white alabastrum(diploid) 3	6.670
	CNS0095595	Whole white alabastrum(diploid) 2	5.006
	CNS0095596	Whole white alabastrum(diploid) 3	1.831
	CNS0095597	Whole white alabastrum(diploid) 4	6.171
	CNS0095598	Silvery flower (diploied) 1	18.435
	CNS0095599	Silvery flower (diploied) 2	11.611
	CNS0095600	Silvery flower (diploied) 3	10.636
	CNS0095601	Golden flower (diploid) 1	12.022
	CNS0095602	Golden flower (diploid) 2	15.669
	CNS0095603	Golden flower (diploid) 3	16.362
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.454
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.178
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.686
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.614
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.351
	CNS0095610	Silvery flower (tetraploid) 1	4.875
	CNS0095611	Silvery flower (tetraploid) 2	3.771
	CNS0095612	Silvery flower (tetraploid) 3	1.296
	CNS0095613	Golden flower (tetraploid) 1	2.881
	CNS0095614	Golden flower (tetraploid) 2	5.391
	CNS0095615	Golden flower (tetraploid) 3	4.182
CRA001975	CRR073297	Stem 1	7.833
	CRR073298	Stem 2	7.613
	CRR073299	Stem 3	6.261
	CRR073300	Leaf 1	15.162
	CRR073301	Leaf 2	11.755
	CRR073302	Leaf 3	7.820
	CRR073303	Juvenile bud 1	8.802
	CRR073304	Juvenile bud 2	7.008
	CRR073305	Juvenile bud 3	19.241
	CRR073306	Third green 1	5.559
	CRR073307	Third green 2	4.477
	CRR073308	Third green 3	5.496
	CRR073309	Second white 1	5.661
	CRR073310	Second white 2	7.832
	CRR073311	Second white 3	4.517
	CRR073312	Silver flowering 1	5.906
	CRR073313	Silver flowering 2	6.011
	CRR073314	Silver flowering 3	3.246
	CRR073315	Gold flowering 1	6.413
	CRR073316	Gold flowering 2	10.376
	CRR073317	Gold flowering 3	10.693
	CRR073318	Tawny withering 1	6.749
	CRR073319	Tawny withering 2	6.386
	CRR073320	Tawny withering 3	7.274