Gene detail

Detail information of GWHGAAZE011705

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	0	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT5G15080.1	1E-164	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71748090	71756091	+
GWHAAZE00000003	mRNA	71748090	71756091	+
GWHAAZE00000003	exon	71748090	71749173	+
GWHAAZE00000003	exon	71751780	71752120	+
GWHAAZE00000003	exon	71752230	71752365	+
GWHAAZE00000003	exon	71753962	71754098	+
GWHAAZE00000003	exon	71754172	71754295	+
GWHAAZE00000003	exon	71755760	71756091	+
GWHAAZE00000003	CDS	71748090	71749173	+
GWHAAZE00000003	CDS	71751780	71752120	+
GWHAAZE00000003	CDS	71752230	71752365	+
GWHAAZE00000003	CDS	71753962	71754098	+
GWHAAZE00000003	CDS	71754172	71754295	+
GWHAAZE00000003	CDS	71755760	71756091	+

Transcript Sequence
>GWHTAAZE011717 ATGGCTGTACCGGTAACACCACTGCCGGAGCACTTCAACTCGCTGCCGTTGCCTTTGCCGGAGCAATTGTGCCGTCCCTTCTCCTTTGCCGAGATCTTATCCGCAACTAACAACTTCGACGATTCATTGGTTATTGGGCAAGGCGGATTTGGTAAAGTATACAAAGGGGTCATCGACAACGGGGCAAGTATTGTTGCTATAAAACGGCTAAGCTCTGCATCTAAGCAAGGAGATTCCGAATTCAGAACCGAGATTGAGATGCTCTCAAAATTCCGGCACTCTCATATTGTGTCTTTAATTGGTTACTGTTATAGTTCCACTGAGATGATCCTTGTCTACGAACATATGGTCAACGGGTCTCTAGCGGATCACTTGCACAAAATTGGCAAGTATGGTAGTTCTAATTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTCCATACAGGTACTGGTGTCATACATCGGGATATGAAGAGTTCGAACATCCTGTTAGATAAGAATTGCGCAGCTAAAGTTTCAGACTTTGGTTTGTCTAGAATCAACCCAAGTGATCCGTCTTGCACTCATATCACCACAAATGTAAAAGGGACAACGGGGTATATGGATCCGGAATATTTGGTAACCTTCCGATTGACAATGAAATCCGATGTCTACTCTTTTGGGGTTGTACTATTTGAAGTGTTGTGTGGAAGGCGAGCGGTGGATTTTACACTTGATGAAGAGCAATGGAGTCTTGCTAGGTGGGCCCAATGCTGTATTGAAAAAGGAACGCTTCATCGTATTATCAATCCTAATTTGTGGTTGGAAATCTTGCCGGAATCTTTGAAAGAGTTTGTGCGAATTGCAAATCAATGCTTATGTTATCAGCGGAAAAAACGACCTACAATGACTCAGGTTGTGAGCTCACTCGAGTTGGCGTTGGCATTGCAACTAGGACACAAAGATTCTTCTGCATTTGAAATGGAAATTATTTGTACAACTGAGGCAGATAAAATCATAGAAAATGTTGACTCAACAATGGTACAAGAAGAAAGGCAATCGTTTATGTTCTCGACAGCGGAAAGTAAATCAACAAACGATAGGAATAATAAAGACCAACCAGTTGCTCCCATTTTATCGTCCTCAAACACTAGCAATGGTGAAAGTACTCCATCCACTCCCAACGTGGGAGAGGAACTGAAAATTTCTTCTCAGCTTCGAAAATTCTCTTTCCGTGAGCTCAAGGCAGCAACATGGAATTTTGGACCTAAGAGTTTCCTTGGTGAGGGTGGCTTCGGCTATGTCTTCAAAGGCTGGATCAACGAAAATGGAATCACACCAGTAAAACCAGGCACGGGTCTTACGGTTGCTGTTAAAAACCTCAAGCATGATGGACTTCAGGGTCACAAAGAATGGCTTGCTGAAGTAAATTTTCTCGGCGACTTACTCCATCCTAACTTGGTTAAATTGATTGGATGTTGCATCGAGGATGACAAAAGGCTGCTTGTGTATGAGTTCATGCCTCAGGGAAGCCTGGAGAATCACTTGTTTAGAAGGTCTCTTCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGACTTGCTTTTCTTCATGAGGAAGCTGAAAGACCAGTTATATACAGAGATTTTAAGATGTCTAATATTCTATTGGACGCGGACTACAATGCAAAGCTTTCTGATTTTGAACTTGCCAAAGACAGACCTGATGGAGATAAGACACATGTATCTACTCAGGAATTTGGAACATACGGCTATGCAGCCCCCGAATATGTGATGACGGGACATCTAACGTCAAAGAGCAATGTCTACAGCTTTGGAGTTGTTTTGCTTGAAATGTTGACTGGCCGAAGATCAATGGACAAAAACCGATCAAATGGGGAGCATAACCTTGTAGAATGGGCACGCCCACATCTAGGAGAGAGGCGGAAATTCTACCGTTTGATAGATCCACGCCTTGAGGGCCGATTCCCAAGTAAAGGTGCACAAAATGCTGCTCAGTTGGCTGCCCGTTGCCTTGGCCGGGACCCGAAAGCCAGGCCACTGATGAGTGAAGTTGTTGAAGCCCTAATTTGTCTTCCTAACCTCAAAGACATGGCTTGTTCTTCATCCTAG

Network for GWHGAAZE011705

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	310	6.60E-52
PF07714.18	PK_Tyr_Ser-Thr	428	703	1.40E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.433
	SRR3591706	second leaf	1.340
	SRR3591707	mature leaf	2.177
	SRR3591708	Shoot apex	2.556
	SRR3591709	Stem	4.088
	SRR3591710	White floral bud	2.877
	SRR3591711	White flower	3.136
	SRR3591712	Green floral bud	2.384
	SRR3591713	Yellow flower	2.109
SRP173429	SRR8316895	Juvenile bud stage	1.046
	SRR8316896	Juvenile bud stage	1.741
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.885
	SRR8316900	Third green stage	2.310
	SRR8316901	Third green stage	2.395
	SRR8316898	Complete white stage	0.474
	SRR8316899	Complete white stage	2.663
	SRR8316903	Complete white stage	1.412
	SRR8316902	Silver flowering stage	0.938
	SRR8316904	Silver flowering stage	1.457
	SRR8316905	Silver flowering stage	0.332
	SRR8316906	Gold flowering stage	2.255
	SRR8316907	Gold flowering stage	1.599
	SRR8316908	Gold flowering stage	0.854
SRP132670	SRR6706286	Control	1.664
	SRR6706287	Light intensity 50%	1.919
	SRR6706288	Light intensity 20%	2.146
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.705
	CNS0095593	Slightly white alabastrum(diploid) 2	0.900
	CNS0095594	Slightly white alabastrum(diploid) 3	0.897
	CNS0095595	Whole white alabastrum(diploid) 2	0.556
	CNS0095596	Whole white alabastrum(diploid) 3	0.599
	CNS0095597	Whole white alabastrum(diploid) 4	0.912
	CNS0095598	Silvery flower (diploied) 1	1.765
	CNS0095599	Silvery flower (diploied) 2	0.806
	CNS0095600	Silvery flower (diploied) 3	1.879
	CNS0095601	Golden flower (diploid) 1	1.661
	CNS0095602	Golden flower (diploid) 2	2.101
	CNS0095603	Golden flower (diploid) 3	2.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.016
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.021
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.253
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.041
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.038
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.105
	CNS0095610	Silvery flower (tetraploid) 1	0.110
	CNS0095611	Silvery flower (tetraploid) 2	0.036
	CNS0095612	Silvery flower (tetraploid) 3	0.016
	CNS0095613	Golden flower (tetraploid) 1	0.081
	CNS0095614	Golden flower (tetraploid) 2	0.064
	CNS0095615	Golden flower (tetraploid) 3	0.017
CRA001975	CRR073297	Stem 1	2.399
	CRR073298	Stem 2	2.273
	CRR073299	Stem 3	2.486
	CRR073300	Leaf 1	2.985
	CRR073301	Leaf 2	2.389
	CRR073302	Leaf 3	2.267
	CRR073303	Juvenile bud 1	2.627
	CRR073304	Juvenile bud 2	1.294
	CRR073305	Juvenile bud 3	2.214
	CRR073306	Third green 1	0.454
	CRR073307	Third green 2	0.161
	CRR073308	Third green 3	0.236
	CRR073309	Second white 1	0.179
	CRR073310	Second white 2	0.210
	CRR073311	Second white 3	0.085
	CRR073312	Silver flowering 1	0.464
	CRR073313	Silver flowering 2	0.306
	CRR073314	Silver flowering 3	0.416
	CRR073315	Gold flowering 1	1.193
	CRR073316	Gold flowering 2	3.031
	CRR073317	Gold flowering 3	0.815
	CRR073318	Tawny withering 1	2.678
	CRR073319	Tawny withering 2	2.873
	CRR073320	Tawny withering 3	3.488