Gene detail

Detail information of GWHGAAZE011704

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP41243.1	hypothetical protein JCGZ_15650 [Jatropha curcas]
Swissprot	tr\|Q42510\|GNOM_ARATH	ARF guanine-nucleotide exchange factor GNOM
trEMBL	tr\|A0A067L230\|A0A067L230_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41243.1}
TAIR10	AT1G13980.2	sec7 domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71737509	71742529	+
GWHAAZE00000003	mRNA	71737509	71742529	+
GWHAAZE00000003	exon	71737509	71738210	+
GWHAAZE00000003	exon	71738930	71742529	+
GWHAAZE00000003	CDS	71737509	71738210	+
GWHAAZE00000003	CDS	71738930	71742529	+

Transcript Sequence
>GWHTAAZE011716 ATGAAAGCTATGGGGTCCTTAAACCAGCACTCTGACATAAATACCTTTGCTCCAGAACTCAAAAACTGTTCCAGTAGGCCTTCCGGAGGCGATTTAGCACTTATGGTGAATTCAGAAATAGGTGCAGTTTTGGCTGTTATGAGGAGAAATGTAAGGTGGGGGGTCCGCTATATGGCCGATGATGATCAACTCGAACACTCTTTAATCCTATCCTTCAAAGAATTACGCAGAAAAATTTTCTCTTGGCAACATCAGTGGCATTTGATTAACGCAGTCGTGTACCTCCAGCCATTTTTGGATGTGATTCAATCCGATGAAACCGGTGCACCAATCACCGGTGTTGCTTTATCATCTGTTTACAAATTCTTAACATTAGAGATATTTGATTTAGATACTGTGAATGTGGACGATGCTTTGCATTTGATAGTTGATGCCGTTACAAGTTGTCGTTTTGAGGTCACCGATCCAGCTTCTGAAGAGTTGGTGCTGATGAAGATACTTCAGGTTCTTTTGGCCTGCATGAAGAATAAGGCATCACTTAAGTTGAGTAATCAGCATGTATGCAATATTGTGAATACTTGTTTTCGTGTTGTTCATCAAGCAAGCTCTAAAGGTGAATTGTTGCAAAGGATAGCACGCCATACGATGCATGAACTAATTAGGTGTATTTTTTTGCACCTGCCTGACATTGATAATACAGAGGTCAGTGTGCGAGATGCAGATCACACTTCCGGAAGTAAACAGCAAAACAATGGCAATGCCAGTTCAGAACATGATGACAAGACTTATTCTGTTGGAGTTTCTTCGAATGTTTCAACAGACACATCTGAAGGGGATGGAAATATAATGGAGGTTGGTCAAGGGAAAGAGGCTGCTCAGAGCGGAGACCATCTTATGAAGGAGCCGTACGGGGTCCCGTGCATGGTGGAAATATTTCACTTCTTATGTTCCCTTTTGAATATTATCGAGCAGCACAGTGGAATCGGTCCGAGATCAAACCCTATAGCATATGATGAAGATGTCCCACTATTCGCATTAGGGTTAATCAATTCGGCTATTGAATTGGGCGGGGCCTCATTTGCCCATCACCCAAAACTACTGGCTTTGATACAAGATGAACTTTTCCGCCACTTGATGCAGTTCGGTTTGTCAATGAGTCCGCTAATCCTTTCCACAGTATGTAGCATTGTTCTAAATCTGTATCATCATTTGCGTACCAAGCTTAAACTACAGCTTGAAGCTTTCTTCTCTTGTGTCCTTTTGAGAATTGCACAGAGCAAGCATGGAGCTTCGTATCAACAGCAGGAGGTTGCTATGGAGACACTTGTTGACCTTTGTAGACAACAGACGTTTATGGCTGAGATGTATGTGAACTTCGATTGTGATATATCTTGCAATAATGTATTTGAAGAACTCGCCAATTTATTATCGAAAAGCGCTTTCCCGGTGAACAGCCCTTTATCTGCAATGCACATTCTTGCTCTCGATGGCCTAATCTCCATGATCCAGGGCATGGCCGAAAGAACATTCAGCGGGTTGCCAGCTTCGCTAAGTCTTGAAGATTACCAACCGTTTTGGATGGTGAAATGCAATAACTACGTCGACCCTAGTCAGTGGGTCCCATTTGCTCATAAGATGAAGTTCATCAAGAGGAAATTGATGATCGGAGCTGATCACTTCAACCGGGCCCCTATGAAAGGTCTTGAATTTCTCCAAGGAATGCATCTTTTGCCCGATAAACTCGACTCACAAAGTGTGGCTTGCTTTCTTCGGTACACAACCGGGTTAGATAAGAATCTTGTTGGGGATTTTCTTGGAAATCATGATGAATTTTGTATTGAAGTGCTTCACGAATTCACTCGGACTTTTGATTTTTCCAACATGAATTTGGACACTGCATTGCGGGTTTTATTGGAGTCTTTTAAATTGCCTGGAGAGTCGCAAAAGATACAAAGGGTTCTCGAGGCCTTTGCGGAAAGATATTACGAACAGTCACCACATATCTTGGCCAACAAAGATGCTGCTCTTTTACTGTCGTATTCATTAATATTGCTTAACACAGACCAACACAATGCCCAGGTGAAGAAGAAGATGACAGAGGAAGATTTTATACGTAACAATCGGCACATAAACGGAGGGAATGATCTCCCTCGTGAGTACTTATGTGAGCTTTACCACTCAATCTGCATGAATGAGATCCGCATGACCCCAGAGACAGGTGCCGGCTTTCCAGTGATGACACCAAGCCATTGGATTGGTCTGAAGCACAAATCGAAACAATCCGCTCCATTCATCGTCTGCGATTCGCGAGAGAATCTCGACTATGATATGTTTAGAATTCTGTCTAGTCCCACTATTGCCGCCCTCTCTGTGGTTTACGATCATGTGGAGCAGGAAGATGTTTTACAAACATGCATTGACGGGTTCTTAGCCGTTGCTAAAATTGCAGCTCGCTATAATCTTGATGATGTTTTGGATGATTTGGTCGTACCTCTTTGTAAATTTACAACCCTTTTGCTTCCACTATCTGTTGAAGAATCTATCCTTGCATTTGGGGATGATACTAAAGCTAGAATGGCGACGGTGGCAGTTTTCACCATAGCAAATAAATACGGTGATTATATACGCGGTGGTTGGAAAAACATTCTTGATTGCATTTTGAGCTTGCACCGGCTAGGCCTTGTTCCTACCCATTTGGTCAGTGATGCAACCGATGAGTTGGACCCTGCGCCTATACTTGAGCGAGGGCGAGCTGCTGCAGCTCCCCCACCGGTTTCCCATAAGCCGTCTCTGATCACTTCTCAAAGGTCATCTAGTTTGATGGGTCGATTTAGCCAATTCTTGTATCTTGATGCAGACGAACCAGCCCCACAACCTACCGAAGAACAAGTTTTAGCTCATCAACGGTCTCTTCAGGCAGTTCAAAATTGCCACATTGATAACATTTTTGCGGAAAGTAAGTTTTTGCAATCCGATTCCCTGTCGCAGCTAGCACAGGCCCTCATCTTAGCTGCGGGCCAGTCCTACAAAGGGAATAATTCTGTTGAAAATGAAGACATTGCAGTTGTTTGCTTGGAGTTGCTGATTGCAGTGACATTAAATAACCGGGATAGAATTATGCTTCTTTGGCAGGGCATTTATGAGCACATAGCCAACGTTGTACAATCAGCTGTAATGCCTTGTACCTTAGTTGAGAAGGCCGTGTTTGGCCTCCTTCGTATATGCCAACGATTACTCCCTTACAAGGAGAACTTGACTGACGAGCTACTCAAGTCTTTACAACTGGTTCTAAAACTCGACGCTCGCGTTGCTGATGCGTACTGTGAGCAAATCACAAATGAAGTTATGCGCCTTGTTAAGGCAAACGCGATGCAGATCCGATCCCATGTGGGGTGGCGCACCGTAACCTCACTGCTCTCCATCACAGCCAGGCACCCAGAAGCATCTGAGGTTGGGTTTCAGACCCTTGAGTTCATCATGTCTGATGGGGCTCATCTCTTGCCGGCGAACTATGTGCTGTGTGTGAATGCGGCTCGGCAGTTTGCTGAGTCCCGGGTTGGGAATATTGAACTGTCAATTAAATCTTTGGATCTGATGGCGAATTCATTGGTCTGCCTCGTTCGATGGGCTTGCAAGACAAAAGAAGCCGTAGGGGAAGAGGCTTTGGCTCTTGCGAAAATGTATCAAGATATCAGTGAAATGTGGTTGAGATTGTTACAAGGACTTGGAAAAGTTTGCATGGACCAACGAGAAGAGGTTCGTAACCACTCAATTTTGATGTTGCAAAGGTGCTTAACCGGAATGGATGGTATCCATATTCCGAATGAGCTTTGGTTACAATGTTTCTATCAGGTGATCTTCACGTTGCTTGATGAAATTTTGCAAATAGCAGAGGATAATTCCCCAAAGGAGTATCGGAACATGGAAACGTCGCTATTTTTGTGCTTGAAACTTTTGTCGAAAGTCTTTTTACGGTTGATGGAGGATCTTTATCAGTTGAGTTCCTTTTGTAGACTATGGGTTGGGGTACTTGGTTGTATGGAGAGATATATGAAGGCTAAATTAAGAGGTAAAAGGAGTGAGAAAGTACACGAATTAGTACCTGAGCTCCTCAAGAACACCTTACTTGTGATGAAGTCTCGAGGAATTCTTGTGGAAGACGATTCCGTTGGTGAAAGTTTCTGGCAATTAACGTGGTTACATGTGAAAAATATTTCCCCGTCTTTGCAGTTAGAAGTTTTCCCCGAGCACAATAAAGCAGGGTGTAGTCCGCTCCCTGATGGGAATTTAGTGGTTCAGTGA

Network for GWHGAAZE011704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.8	Sec7_N	306	468	2.20E-34
PF01369.21	Sec7	550	733	1.90E-66

Protein Sequence

>GWHPAAZE011710
MKAMGSLNQHSDINTFAPELKNCSSRPSGGDLALMVNSEIGAVLAVMRRNVRWGVRYMADDDQLEHSLILSFKELRRKIFSWQHQWHLINAVVYLQPFLDVIQSDETGAPITGVALSSVYKFLTLEIFDLDTVNVDDALHLIVDAVTSCRFEVTDPASEELVLMKILQVLLACMKNKASLKLSNQHVCNIVNTCFRVVHQASSKGELLQRIARHTMHELIRCIFLHLPDIDNTEVSVRDADHTSGSKQQNNGNASSEHDDKTYSVGVSSNVSTDTSEGDGNIMEVGQGKEAAQSGDHLMKEPYGVPCMVEIFHFLCSLLNIIEQHSGIGPRSNPIAYDEDVPLFALGLINSAIELGGASFAHHPKLLALIQDELFRHLMQFGLSMSPLILSTVCSIVLNLYHHLRTKLKLQLEAFFSCVLLRIAQSKHGASYQQQEVAMETLVDLCRQQTFMAEMYVNFDCDISCNNVFEELANLLSKSAFPVNSPLSAMHILALDGLISMIQGMAERTFSGLPASLSLEDYQPFWMVKCNNYVDPSQWVPFAHKMKFIKRKLMIGADHFNRAPMKGLEFLQGMHLLPDKLDSQSVACFLRYTTGLDKNLVGDFLGNHDEFCIEVLHEFTRTFDFSNMNLDTALRVLLESFKLPGESQKIQRVLEAFAERYYEQSPHILANKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRNNRHINGGNDLPREYLCELYHSICMNEIRMTPETGAGFPVMTPSHWIGLKHKSKQSAPFIVCDSRENLDYDMFRILSSPTIAALSVVYDHVEQEDVLQTCIDGFLAVAKIAARYNLDDVLDDLVVPLCKFTTLLLPLSVEESILAFGDDTKARMATVAVFTIANKYGDYIRGGWKNILDCILSLHRLGLVPTHLVSDATDELDPAPILERGRAAAAPPPVSHKPSLITSQRSSSLMGRFSQFLYLDADEPAPQPTEEQVLAHQRSLQAVQNCHIDNIFAESKFLQSDSLSQLAQALILAAGQSYKGNNSVENEDIAVVCLELLIAVTLNNRDRIMLLWQGIYEHIANVVQSAVMPCTLVEKAVFGLLRICQRLLPYKENLTDELLKSLQLVLKLDARVADAYCEQITNEVMRLVKANAMQIRSHVGWRTVTSLLSITARHPEASEVGFQTLEFIMSDGAHLLPANYVLCVNAARQFAESRVGNIELSIKSLDLMANSLVCLVRWACKTKEAVGEEALALAKMYQDISEMWLRLLQGLGKVCMDQREEVRNHSILMLQRCLTGMDGIHIPNELWLQCFYQVIFTLLDEILQIAEDNSPKEYRNMETSLFLCLKLLSKVFLRLMEDLYQLSSFCRLWVGVLGCMERYMKAKLRGKRSEKVHELVPELLKNTLLVMKSRGILVEDDSVGESFWQLTWLHVKNISPSLQLEVFPEHNKAGCSPLPDGNLVVQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.688
	SRR3591706	second leaf	1.767
	SRR3591707	mature leaf	2.333
	SRR3591708	Shoot apex	1.641
	SRR3591709	Stem	2.391
	SRR3591710	White floral bud	2.560
	SRR3591711	White flower	4.576
	SRR3591712	Green floral bud	3.347
	SRR3591713	Yellow flower	3.396
SRP173429	SRR8316895	Juvenile bud stage	1.024
	SRR8316896	Juvenile bud stage	1.438
	SRR8316897	Juvenile bud stage	0.025
	SRR8316894	Third green stage	0.677
	SRR8316900	Third green stage	2.283
	SRR8316901	Third green stage	1.842
	SRR8316898	Complete white stage	0.515
	SRR8316899	Complete white stage	2.167
	SRR8316903	Complete white stage	1.104
	SRR8316902	Silver flowering stage	0.722
	SRR8316904	Silver flowering stage	1.176
	SRR8316905	Silver flowering stage	0.306
	SRR8316906	Gold flowering stage	1.860
	SRR8316907	Gold flowering stage	1.556
	SRR8316908	Gold flowering stage	0.539
SRP132670	SRR6706286	Control	1.607
	SRR6706287	Light intensity 50%	1.825
	SRR6706288	Light intensity 20%	1.772
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.165
	CNS0095593	Slightly white alabastrum(diploid) 2	1.450
	CNS0095594	Slightly white alabastrum(diploid) 3	0.980
	CNS0095595	Whole white alabastrum(diploid) 2	1.030
	CNS0095596	Whole white alabastrum(diploid) 3	1.057
	CNS0095597	Whole white alabastrum(diploid) 4	1.177
	CNS0095598	Silvery flower (diploied) 1	1.250
	CNS0095599	Silvery flower (diploied) 2	0.762
	CNS0095600	Silvery flower (diploied) 3	2.946
	CNS0095601	Golden flower (diploid) 1	1.231
	CNS0095602	Golden flower (diploid) 2	2.359
	CNS0095603	Golden flower (diploid) 3	2.563
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.650
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.920
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.100
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.772
	CNS0095610	Silvery flower (tetraploid) 1	2.413
	CNS0095611	Silvery flower (tetraploid) 2	2.422
	CNS0095612	Silvery flower (tetraploid) 3	1.637
	CNS0095613	Golden flower (tetraploid) 1	0.808
	CNS0095614	Golden flower (tetraploid) 2	1.692
	CNS0095615	Golden flower (tetraploid) 3	2.394
CRA001975	CRR073297	Stem 1	2.781
	CRR073298	Stem 2	1.986
	CRR073299	Stem 3	2.045
	CRR073300	Leaf 1	2.904
	CRR073301	Leaf 2	1.673
	CRR073302	Leaf 3	1.702
	CRR073303	Juvenile bud 1	2.745
	CRR073304	Juvenile bud 2	1.475
	CRR073305	Juvenile bud 3	2.705
	CRR073306	Third green 1	0.347
	CRR073307	Third green 2	0.467
	CRR073308	Third green 3	0.615
	CRR073309	Second white 1	0.903
	CRR073310	Second white 2	1.387
	CRR073311	Second white 3	1.533
	CRR073312	Silver flowering 1	1.536
	CRR073313	Silver flowering 2	0.758
	CRR073314	Silver flowering 3	0.628
	CRR073315	Gold flowering 1	0.732
	CRR073316	Gold flowering 2	1.127
	CRR073317	Gold flowering 3	0.899
	CRR073318	Tawny withering 1	1.251
	CRR073319	Tawny withering 2	0.492
	CRR073320	Tawny withering 3	1.364