Detail information of GWHGAAZE011677


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011097709.10PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Sesamum indicum]
Swissprottr|Q3ECP0|TFB1A_ARATH0Probable RNA polymerase II transcription factor B subunit 1-1
trEMBLtr|D7UAQ6|D7UAQ6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI39821.3}
TAIR10AT1G55750.15E-150BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7115337071170973-
GWHAAZE00000003mRNA7115337071170973-
GWHAAZE00000003exon7117089371170973-
GWHAAZE00000003exon7117032071170398-
GWHAAZE00000003exon7116976071169821-
GWHAAZE00000003exon7116923771169300-
GWHAAZE00000003exon7116884271168968-
GWHAAZE00000003exon7116805871168133-
GWHAAZE00000003exon7116749771167592-
GWHAAZE00000003exon7116723071167274-
GWHAAZE00000003exon7116662271166678-
GWHAAZE00000003exon7116559271165747-
GWHAAZE00000003exon7116538271165447-
GWHAAZE00000003exon7116440271164525-
GWHAAZE00000003exon7116418971164245-
GWHAAZE00000003exon7116394471164071-
GWHAAZE00000003exon7116359971163790-
GWHAAZE00000003exon7116345571163492-
GWHAAZE00000003exon7116314471163312-
GWHAAZE00000003exon7116184871161895-
GWHAAZE00000003exon7115400571154073-
GWHAAZE00000003exon7115337071153546-
GWHAAZE00000003CDS7117089371170973-
GWHAAZE00000003CDS7117032071170398-
GWHAAZE00000003CDS7116976071169821-
GWHAAZE00000003CDS7116923771169300-
GWHAAZE00000003CDS7116884271168968-
GWHAAZE00000003CDS7116805871168133-
GWHAAZE00000003CDS7116749771167592-
GWHAAZE00000003CDS7116723071167274-
GWHAAZE00000003CDS7116662271166678-
GWHAAZE00000003CDS7116559271165747-
GWHAAZE00000003CDS7116538271165447-
GWHAAZE00000003CDS7116440271164525-
GWHAAZE00000003CDS7116418971164245-
GWHAAZE00000003CDS7116394471164071-
GWHAAZE00000003CDS7116359971163790-
GWHAAZE00000003CDS7116345571163492-
GWHAAZE00000003CDS7116329171163312-
GWHAAZE00000003three_prime_UTR7116314471163290-
GWHAAZE00000003three_prime_UTR7116184871161895-
GWHAAZE00000003three_prime_UTR7115400571154073-
GWHAAZE00000003three_prime_UTR7115337071153546-
Transcript Sequence

Network for GWHGAAZE011677

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0110Transcription factor BSD family Transcription factor BSD
map00900 Terpenoid backbone biosynthesis
map04146 Peroxisome
map03022 Basal transcription factors
map03420 Nucleotide excision repair


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03909.18BSD1972497.80E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyBSD

KEGG pathway

KO Enzyme pathway mapID
K03141TFIIH1, GTF2H1, TFB1 Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.064
SRR3591706second leaf1.584
SRR3591707mature leaf1.495
SRR3591708Shoot apex2.757
SRR3591709Stem2.301
SRR3591710White floral bud2.219
SRR3591711White flower2.235
SRR3591712Green floral bud2.830
SRR3591713Yellow flower1.016
SRP173429 SRR8316895Juvenile bud stage 5.001
SRR8316896Juvenile bud stage 7.773
SRR8316897Juvenile bud stage 1.433
SRR8316894Third green stage 3.100
SRR8316900Third green stage 8.043
SRR8316901Third green stage 7.512
SRR8316898Complete white stage 2.339
SRR8316899Complete white stage 5.975
SRR8316903Complete white stage 4.346
SRR8316902Silver flowering stage1.655
SRR8316904Silver flowering stage2.487
SRR8316905Silver flowering stage1.185
SRR8316906Gold flowering stage 3.321
SRR8316907Gold flowering stage 2.493
SRR8316908Gold flowering stage 2.210
SRP132670SRR6706286Control5.128
SRR6706287Light intensity 50%6.025
SRR6706288Light intensity 20%6.490
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.787
CNS0095593Slightly white alabastrum(diploid) 24.629
CNS0095594Slightly white alabastrum(diploid) 36.198
CNS0095595Whole white alabastrum(diploid) 24.651
CNS0095596Whole white alabastrum(diploid) 35.637
CNS0095597Whole white alabastrum(diploid) 43.802
CNS0095598Silvery flower (diploied) 13.467
CNS0095599Silvery flower (diploied) 22.456
CNS0095600Silvery flower (diploied) 33.405
CNS0095601Golden flower (diploid) 12.053
CNS0095602Golden flower (diploid) 22.897
CNS0095603Golden flower (diploid) 33.042
CNS0095604Slightly white alabastrum(tetraploid) 13.508
CNS0095605Slightly white alabastrum(tetraploid) 22.416
CNS0095606Slightly white alabastrum(tetraploid) 32.589
CNS0095607Whole white alabastrum(tetraploid) 12.673
CNS0095608Whole white alabastrum(tetraploid) 22.030
CNS0095609Whole white alabastrum(tetraploid) 32.878
CNS0095610Silvery flower (tetraploid) 11.139
CNS0095611Silvery flower (tetraploid) 21.230
CNS0095612Silvery flower (tetraploid) 30.923
CNS0095613Golden flower (tetraploid) 10.308
CNS0095614Golden flower (tetraploid) 20.965
CNS0095615Golden flower (tetraploid) 30.762
CRA001975CRR073297Stem 16.870
CRR073298Stem 26.392
CRR073299Stem 33.968
CRR073300Leaf 17.632
CRR073301Leaf 28.003
CRR073302Leaf 33.754
CRR073303Juvenile bud 13.637
CRR073304Juvenile bud 22.203
CRR073305Juvenile bud 33.717
CRR073306Third green 11.081
CRR073307Third green 21.012
CRR073308Third green 31.091
CRR073309Second white 10.985
CRR073310Second white 20.450
CRR073311Second white 30.747
CRR073312Silver flowering 10.664
CRR073313Silver flowering 20.959
CRR073314Silver flowering 30.151
CRR073315Gold flowering 10.798
CRR073316Gold flowering 21.887
CRR073317Gold flowering 30.630
CRR073318Tawny withering 12.957
CRR073319Tawny withering 22.832
CRR073320Tawny withering 34.003