Gene detail

Detail information of GWHGAAZE011651

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99233.1	3.58033E-39	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	2E-15	Myb-related protein Myb4
trEMBL	tr\|A0A068TV82\|A0A068TV82_COFCA	1E-39	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99233.1}
TAIR10	AT3G23250.2	1E-15	myb domain protein 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	69548242	69551260	-
GWHAAZE00000003	mRNA	69548242	69551260	-
GWHAAZE00000003	exon	69551140	69551260	-
GWHAAZE00000003	exon	69550834	69550963	-
GWHAAZE00000003	exon	69548242	69548812	-
GWHAAZE00000003	five_prime_UTR	69551140	69551260	-
GWHAAZE00000003	five_prime_UTR	69550848	69550963	-
GWHAAZE00000003	CDS	69550834	69550847	-
GWHAAZE00000003	CDS	69548356	69548812	-
GWHAAZE00000003	three_prime_UTR	69548242	69548355	-

Transcript Sequence
>GWHTAAZE011663 CTCCATGTTGTGAGAAGATGGGGTTGAAGAAGGGCCATGGACTCCGGATGAAGATCAAATTTTGATCTCTTACATTCAAAGTATGGCCATGCCAATTGGAGGGCTCTTCCTAAACAAGCTGGATTGTTGAGATGTGGGAAGAGTTGCAGACTCCGATGGACGAATTATTTGCGACCGGATATTAAGAGAGGAAATTTCACCAAAGAAGAAGAGGAGACTGTCATTACGCTACATGAAATGCTTGGGAATAGATGGTCCGCAATTGCAGCAAGATTACCGGGACGAACAGATAATGAGATAAAAAATGTTTGGCATACACATTTAAAGAAAAAAATCGGGAATTATCAAGTCTCCAAAAAAGTCTATGTTAAATCACTGGCAAACACGAACTTCTCCGGCCCTACCATGGAGATTAATAACTCCGGCAATGCTGCAGTGTCATCGGAACGTTCTTCAAGTGAACTCTCTTCAGTTTTAGACTCGTCGACCATGGCGACCGTCAAGCACGAAATAATGGACTCGCCCGAGAAATATTTCCCGGATATTGAGGAGACTTTATGGTCGGAAGCCGAGAACTCCGGCGGGGAATCGGAATTTCCGGGGGAATTGAAATTCCAATTCCCATTGTCTCCTGGTTATGATGGGCTGGACTTTTGGTTCGACCTTCTCAATAGGGGAGGGGATTTACCAGAATTACCAGATTTTTGAGCAATGTTTTGGATTTTATTTTTCTTTAGTCAATTAGTGAGAAAATTTGAAGTTAGTGGAATGCATGGTTTTGTTGACTGTCGGCAAATTTGAAAGGTCAAAATTAAAGAGTGG

Network for GWHGAAZE011651

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	2	29	1.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.796
	SRR3591706	second leaf	0.557
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	4.378
	SRR3591709	Stem	0.837
	SRR3591710	White floral bud	2.342
	SRR3591711	White flower	2.057
	SRR3591712	Green floral bud	2.673
	SRR3591713	Yellow flower	1.156
SRP173429	SRR8316895	Juvenile bud stage	1.952
	SRR8316896	Juvenile bud stage	6.402
	SRR8316897	Juvenile bud stage	2.509
	SRR8316894	Third green stage	1.733
	SRR8316900	Third green stage	1.670
	SRR8316901	Third green stage	4.765
	SRR8316898	Complete white stage	1.095
	SRR8316899	Complete white stage	3.821
	SRR8316903	Complete white stage	0.778
	SRR8316902	Silver flowering stage	0.417
	SRR8316904	Silver flowering stage	1.690
	SRR8316905	Silver flowering stage	0.519
	SRR8316906	Gold flowering stage	3.600
	SRR8316907	Gold flowering stage	0.900
	SRR8316908	Gold flowering stage	5.721
SRP132670	SRR6706286	Control	6.580
	SRR6706287	Light intensity 50%	5.158
	SRR6706288	Light intensity 20%	3.742
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.659
	CNS0095593	Slightly white alabastrum(diploid) 2	5.601
	CNS0095594	Slightly white alabastrum(diploid) 3	9.115
	CNS0095595	Whole white alabastrum(diploid) 2	1.592
	CNS0095596	Whole white alabastrum(diploid) 3	0.480
	CNS0095597	Whole white alabastrum(diploid) 4	1.783
	CNS0095598	Silvery flower (diploied) 1	1.139
	CNS0095599	Silvery flower (diploied) 2	0.421
	CNS0095600	Silvery flower (diploied) 3	0.992
	CNS0095601	Golden flower (diploid) 1	2.059
	CNS0095602	Golden flower (diploid) 2	1.918
	CNS0095603	Golden flower (diploid) 3	1.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.266
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.539
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.780
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.108
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.267
	CNS0095610	Silvery flower (tetraploid) 1	0.591
	CNS0095611	Silvery flower (tetraploid) 2	0.048
	CNS0095612	Silvery flower (tetraploid) 3	0.854
	CNS0095613	Golden flower (tetraploid) 1	0.499
	CNS0095614	Golden flower (tetraploid) 2	1.238
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.126
	CRR073298	Stem 2	3.774
	CRR073299	Stem 3	1.547
	CRR073300	Leaf 1	2.603
	CRR073301	Leaf 2	3.924
	CRR073302	Leaf 3	1.966
	CRR073303	Juvenile bud 1	0.265
	CRR073304	Juvenile bud 2	0.166
	CRR073305	Juvenile bud 3	1.463
	CRR073306	Third green 1	0.158
	CRR073307	Third green 2	0.212
	CRR073308	Third green 3	0.881
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.073
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.279
	CRR073313	Silver flowering 2	0.583
	CRR073314	Silver flowering 3	1.462
	CRR073315	Gold flowering 1	2.217
	CRR073316	Gold flowering 2	3.217
	CRR073317	Gold flowering 3	2.717
	CRR073318	Tawny withering 1	48.634
	CRR073319	Tawny withering 2	120.904
	CRR073320	Tawny withering 3	19.524