Gene detail

Detail information of GWHGAAZE011628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN80687.1	6.7105E-101	hypothetical protein VITISV_021550 [Vitis vinifera]
Swissprot	tr\|Q9LW60\|P2C44_ARATH	4E-66	Putative protein phosphatase 2C-like protein 44
trEMBL	tr\|A5B1U8\|A5B1U8_VITVI	3E-101	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80687.1}
TAIR10	AT3G23360.1	2E-54	Protein phosphatase 2C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	69126003	69131149	+
GWHAAZE00000003	mRNA	69126003	69131149	+
GWHAAZE00000003	exon	69126003	69126221	+
GWHAAZE00000003	exon	69127053	69127275	+
GWHAAZE00000003	exon	69129618	69129772	+
GWHAAZE00000003	exon	69131012	69131149	+
GWHAAZE00000003	CDS	69126003	69126221	+
GWHAAZE00000003	CDS	69127053	69127275	+
GWHAAZE00000003	CDS	69129618	69129772	+
GWHAAZE00000003	CDS	69131012	69131149	+

Transcript Sequence
>GWHTAAZE011640 ATGACACCCGTCTCACATGGATATCATGTTGTGGAGGGAAGATTATTATTGGCTGGTGATGAGTCGAGCGATTTGGACACAGACATCGACTCTGTTGTTGTACAAAGAGAACAGATTGAAGACTGCGAGCTATGGTTCTTTGGAGTTTTTGACTATAGAATTGGAGATGGAGTTACCAAGTACATGCAATCACATATCTTTGATAAGAAACCTGAAGTGTCACAAGTAAGAAGGAAGAGCAAAGAAACAATGAAGAAAGCATACCTGGGAGCAAGAGCAAAGAGCAGGGAAATAGACAAGGCCAAAGTAGGGAGCAAAGGGACTTCCAATAGAGTAGTAGGCTCAGCATCAGCTATTGTTATAAATGGAGAGAAGCTTGTGATAGCTAACATGGGAGACTATAGAGCAGTTGTTTGTAAAGATGGCGATGCTTTTCAGATCAGTGCTATACGTATGCCTAAAGTGCGCATGTTAGTTTGTGACTCCAGCCATGCAGTGGGAACTAAACCCTCTAAAAGCTTAGAACCGATTGTTGGATCTCAGAACATAGACCCTGAAACTGAATTTGTTATCTTAGCAAGTACCGGCATTTGGGAGGTAATGAGGCATCAAGAGGCTGTCAGCCTGATCAGGCATATAGAGGACCCACAGGAAGCAGCTGAGTGTTTAGCCAAGGAAGCTCTAATCAGAATGAGCAGAAGCAATATTTCTTGCTTGGTCATCCGCTTTGACTGA

Network for GWHGAAZE011628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	46	148	2.10E-09
PF00481.22	PP2C	171	236	1.20E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19704	PTC1	MAPK signaling pathway - yeast	map04011

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.316
	SRR3591706	second leaf	0.231
	SRR3591707	mature leaf	0.095
	SRR3591708	Shoot apex	1.188
	SRR3591709	Stem	0.812
	SRR3591710	White floral bud	3.593
	SRR3591711	White flower	3.353
	SRR3591712	Green floral bud	3.968
	SRR3591713	Yellow flower	5.611
SRP173429	SRR8316895	Juvenile bud stage	2.614
	SRR8316896	Juvenile bud stage	5.282
	SRR8316897	Juvenile bud stage	1.348
	SRR8316894	Third green stage	1.647
	SRR8316900	Third green stage	8.602
	SRR8316901	Third green stage	6.442
	SRR8316898	Complete white stage	4.164
	SRR8316899	Complete white stage	4.242
	SRR8316903	Complete white stage	5.786
	SRR8316902	Silver flowering stage	1.643
	SRR8316904	Silver flowering stage	3.202
	SRR8316905	Silver flowering stage	1.479
	SRR8316906	Gold flowering stage	5.230
	SRR8316907	Gold flowering stage	4.700
	SRR8316908	Gold flowering stage	6.840
SRP132670	SRR6706286	Control	5.709
	SRR6706287	Light intensity 50%	5.367
	SRR6706288	Light intensity 20%	5.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.633
	CNS0095593	Slightly white alabastrum(diploid) 2	2.776
	CNS0095594	Slightly white alabastrum(diploid) 3	2.646
	CNS0095595	Whole white alabastrum(diploid) 2	5.046
	CNS0095596	Whole white alabastrum(diploid) 3	5.802
	CNS0095597	Whole white alabastrum(diploid) 4	5.104
	CNS0095598	Silvery flower (diploied) 1	2.436
	CNS0095599	Silvery flower (diploied) 2	0.958
	CNS0095600	Silvery flower (diploied) 3	5.084
	CNS0095601	Golden flower (diploid) 1	1.229
	CNS0095602	Golden flower (diploid) 2	4.209
	CNS0095603	Golden flower (diploid) 3	4.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.372
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.521
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.159
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.413
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.296
	CNS0095610	Silvery flower (tetraploid) 1	6.948
	CNS0095611	Silvery flower (tetraploid) 2	4.885
	CNS0095612	Silvery flower (tetraploid) 3	5.778
	CNS0095613	Golden flower (tetraploid) 1	7.511
	CNS0095614	Golden flower (tetraploid) 2	8.220
	CNS0095615	Golden flower (tetraploid) 3	10.732
CRA001975	CRR073297	Stem 1	2.513
	CRR073298	Stem 2	2.101
	CRR073299	Stem 3	0.492
	CRR073300	Leaf 1	2.055
	CRR073301	Leaf 2	2.315
	CRR073302	Leaf 3	1.265
	CRR073303	Juvenile bud 1	1.827
	CRR073304	Juvenile bud 2	1.042
	CRR073305	Juvenile bud 3	1.710
	CRR073306	Third green 1	0.903
	CRR073307	Third green 2	1.800
	CRR073308	Third green 3	0.432
	CRR073309	Second white 1	0.878
	CRR073310	Second white 2	0.420
	CRR073311	Second white 3	0.158
	CRR073312	Silver flowering 1	1.089
	CRR073313	Silver flowering 2	0.058
	CRR073314	Silver flowering 3	1.152
	CRR073315	Gold flowering 1	0.057
	CRR073316	Gold flowering 2	0.285
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.096
	CRR073319	Tawny withering 2	1.801
	CRR073320	Tawny withering 3	0.218