Gene detail

Detail information of GWHGAAZE011609

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15105.1	6.8256E-122	unnamed protein product [Coffea canephora]
Swissprot	tr\|P85076\|PME_ACTDE	2E-105	Pectinesterase
trEMBL	tr\|A0A068V2T5\|A0A068V2T5_COFCA	3E-122	Coffea canephora DH200=94 genomic scaffold, scaffold_95 {ECO:0000313\|EMBL:CDP15105.1}
TAIR10	AT2G26450.1	1E-85	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	68664563	68665742	+
GWHAAZE00000003	mRNA	68664563	68665742	+
GWHAAZE00000003	exon	68664563	68664881	+
GWHAAZE00000003	exon	68665060	68665742	+
GWHAAZE00000003	CDS	68664563	68664881	+
GWHAAZE00000003	CDS	68665060	68665742	+

Transcript Sequence
>GWHTAAZE011621 ATGCTCTTCCTTGGGCTTCTTAGTATGATAATCACTCTCCCCTGTTGGATACAATGTAGATCAATGCCAACTGATGTTATCGTCGCAAAGGATGGCACGGGCAATTTTTCATTGGTTAAGGATGCTATAGAAGCTGCCCCGAACTTTGGCTCGACAAGATTTTACATTAGGATCAAAGAAGGCTCCTACATTGAGCATATAATTATTGGGAAGGAGAAACGAAACATAGCAATTATCGGTGATGGGATCGGGAAAACTATCATTTCAGGCAACAGGAGCCAGGGCAGTGGTATTGGCACCGACATGACTGCAACAGTAGGAGTATACGGTGATGGCTTTTTTGTGCAAGGCGTAACATTCAGAAATGTTGCTGGACCACTCAAGCACCAAGCAGTAGCATTAACAAGTGAAGCCGACCGATGTGCCTTCTACCAATGCAGCTTTGAAGGTTTTCAAGATACTCTTTATGCCAAAAAGGGCATTCAGTTTTTCAGGGAATGTGAAATCTATGGTACAGTAGATTTCATCTTCGGGAAGGCATCTGTAGTCTTCCAAAATTGCATTATCTATGCGCGTACTCCTCTTCCTGGGCAGTCAAATATAATAACAGCACAAGGAAGAGCAATGCAGCAGCGCGATGATGGAACAGTCATACACAATTGCACAATCACAGCCACAGAAGACCTGCGCCAACAAGGTTCAAAAGTGAAAACGTATTTGGGCAGGCCGTGGGGAACTTATTCAAGAACGGTGATTATGCAAAGCTTCCTGGATAATATAATCGACCCGCACGGTTGGCTTAACTGGACAGGTCATACACTAGACAGACCGTACTACGCTGAGTTTGATAACAGGGGCCCAGGTGCCAGCACGAATGCAAGAGTCAAATGGGCACTTGTGATCGACAGAGCCACAGCAGTTGAGTATTCCGTTAGGAACTTTATCCAAGGGCATAAATGGATACCAACAATAGGAATTCCAGTTCATCTAGATTTACTGTAA

Network for GWHGAAZE011609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	25	317	6.60E-115

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.132
	SRR3591711	White flower	0.075
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.157
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.059
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.814
	SRR8316903	Complete white stage	0.257
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.026
	SRR6706287	Light intensity 50%	0.017
	SRR6706288	Light intensity 20%	0.065
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.693
	CNS0095593	Slightly white alabastrum(diploid) 2	0.042
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.599
	CNS0095596	Whole white alabastrum(diploid) 3	0.044
	CNS0095597	Whole white alabastrum(diploid) 4	0.055
	CNS0095598	Silvery flower (diploied) 1	0.387
	CNS0095599	Silvery flower (diploied) 2	0.939
	CNS0095600	Silvery flower (diploied) 3	0.039
	CNS0095601	Golden flower (diploid) 1	0.836
	CNS0095602	Golden flower (diploid) 2	0.191
	CNS0095603	Golden flower (diploid) 3	0.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.699
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.498
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.792
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.123
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.156
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000