Gene detail

Detail information of GWHGAAZE011589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006378320.1	2.029E-135	hypothetical protein POPTR_0010s07790g [Populus trichocarpa]
Swissprot	tr\|Q8W034\|RNP1_ARATH	1E-102	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|U5G3V3\|U5G3V3_POPTR	8E-136	Uncharacterized protein {ECO:0000313\|EMBL:ERP56117.1}
TAIR10	AT4G14300.1	6E-75	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	67576899	67583106	+
GWHAAZE00000003	mRNA	67576899	67583106	+
GWHAAZE00000003	exon	67576899	67577108	+
GWHAAZE00000003	exon	67581961	67582027	+
GWHAAZE00000003	exon	67582115	67582693	+
GWHAAZE00000003	exon	67582754	67582927	+
GWHAAZE00000003	exon	67582994	67583106	+
GWHAAZE00000003	CDS	67576899	67577108	+
GWHAAZE00000003	CDS	67581961	67582027	+
GWHAAZE00000003	CDS	67582115	67582693	+
GWHAAZE00000003	CDS	67582754	67582927	+
GWHAAZE00000003	CDS	67582994	67583106	+

Transcript Sequence
>GWHTAAZE011601 CAGGGAAAACTTTTCATAGGAGGAATCTCATGGGAAACATCAGAAGATAGACTGAAAGAGTATTTTGGTAACTATGGTGAGATTCTGCAGGCTGTTGTTATGAGAGACAAGCTCACTGGCCGCCCTCGCGGTTTCGGCTTCGTTGTTTTTTCAGATCCTTCGGTTATCGACACTGTTCTTCTCGATAAACACAACATAGATGGTAGAACGGTTGAGGCTAAGAGGGCCCTATCAAGAGAGGAACAGCAGGTCTCCAAAGCTGGAAACCCCAATGCCGAGGATGGATTTCGCCAGTATTTTGAAGCTTATGGTCATGTAACTGATGTAGTAGTCATGTATGATCAGCAGACAAACCGACCACGTGGATTTGGATTTATTTCCTTTGATTCTGAAGATGCGGTTGATAGGGTTTTACACAAGACCTTCCATGACTTAAACGGAAAGCAAGTAGAGGTGAAGCGGGCTCTTCCTAAAGATGCCAACTCTGGTGGCGGTGGCCGGTCAATGGATGGTGGATCAGGTGGTGGAGGTTATCAGGGTTACGGTGGTTCTGGTGGCAATTCAAGTTCTTATGAAGGTCGAATGGATTCAAGCAGATATATGCAGTCTCAGAATGCTGGAGGGGGGTTTCCATCGTATGGTACACAAGGTTATGGCTATGGTGCTGCTAATAACGGTGCTGGTTATGGTGGCTATGGTGGTTATGGAGGCGGCAATCCTGGGTATGGTGGTCAATCAGGTGGGGCCTATGGAAACCCTAATGTTCCAAATGCTGGTTATGGGAGTGGCCCACAAGGTGCACCAAGAAGTTCATGGGGTAACCAGGGTTCCTCTGGATATGGCACTGCTGGATATGGTCAATCTCCAAGCGGAGCTACCAGTTATGGCAATCAAGGTTATGGTGGTTATGGTGGAACCGAGGGGTCTTACGGTAATCCAGCTGCTTATGGTGCTGTTGGAGGGCGTATCGGGGGTGCCCCGAACAGCAACTATTCTGCGGGTGGCGGTGCTGGTGGAGAGCTACAATCAGGGTGGAGATCTGATCCATCGCAAGCCAACTATGGGGCCCAAGCAAACAGCGGGCAAATTGGTTATGGTGGTGGGTACGGTGGGGCTCCGGCCCGACAGGCTCAGCAGCAGTGA

Network for GWHGAAZE011589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	4	71	8.50E-14
PF00076.23	RRM_1	93	140	1.30E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.240
	SRR3591706	second leaf	40.093
	SRR3591707	mature leaf	26.763
	SRR3591708	Shoot apex	70.832
	SRR3591709	Stem	46.454
	SRR3591710	White floral bud	50.557
	SRR3591711	White flower	73.895
	SRR3591712	Green floral bud	52.165
	SRR3591713	Yellow flower	50.962
SRP173429	SRR8316895	Juvenile bud stage	37.048
	SRR8316896	Juvenile bud stage	48.761
	SRR8316897	Juvenile bud stage	22.146
	SRR8316894	Third green stage	19.550
	SRR8316900	Third green stage	45.571
	SRR8316901	Third green stage	53.449
	SRR8316898	Complete white stage	19.171
	SRR8316899	Complete white stage	50.087
	SRR8316903	Complete white stage	37.135
	SRR8316902	Silver flowering stage	34.443
	SRR8316904	Silver flowering stage	39.301
	SRR8316905	Silver flowering stage	19.821
	SRR8316906	Gold flowering stage	70.503
	SRR8316907	Gold flowering stage	67.950
	SRR8316908	Gold flowering stage	73.201
SRP132670	SRR6706286	Control	71.992
	SRR6706287	Light intensity 50%	73.212
	SRR6706288	Light intensity 20%	83.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.478
	CNS0095593	Slightly white alabastrum(diploid) 2	49.636
	CNS0095594	Slightly white alabastrum(diploid) 3	42.796
	CNS0095595	Whole white alabastrum(diploid) 2	33.791
	CNS0095596	Whole white alabastrum(diploid) 3	35.649
	CNS0095597	Whole white alabastrum(diploid) 4	26.547
	CNS0095598	Silvery flower (diploied) 1	59.502
	CNS0095599	Silvery flower (diploied) 2	50.958
	CNS0095600	Silvery flower (diploied) 3	60.446
	CNS0095601	Golden flower (diploid) 1	39.595
	CNS0095602	Golden flower (diploid) 2	52.364
	CNS0095603	Golden flower (diploid) 3	51.827
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.579
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.981
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.997
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.633
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.370
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.793
	CNS0095610	Silvery flower (tetraploid) 1	73.855
	CNS0095611	Silvery flower (tetraploid) 2	52.277
	CNS0095612	Silvery flower (tetraploid) 3	55.458
	CNS0095613	Golden flower (tetraploid) 1	49.537
	CNS0095614	Golden flower (tetraploid) 2	66.063
	CNS0095615	Golden flower (tetraploid) 3	59.133
CRA001975	CRR073297	Stem 1	50.492
	CRR073298	Stem 2	44.913
	CRR073299	Stem 3	53.131
	CRR073300	Leaf 1	48.889
	CRR073301	Leaf 2	48.393
	CRR073302	Leaf 3	43.717
	CRR073303	Juvenile bud 1	47.299
	CRR073304	Juvenile bud 2	40.852
	CRR073305	Juvenile bud 3	67.195
	CRR073306	Third green 1	49.340
	CRR073307	Third green 2	41.604
	CRR073308	Third green 3	44.384
	CRR073309	Second white 1	44.450
	CRR073310	Second white 2	41.682
	CRR073311	Second white 3	39.161
	CRR073312	Silver flowering 1	44.376
	CRR073313	Silver flowering 2	48.051
	CRR073314	Silver flowering 3	41.242
	CRR073315	Gold flowering 1	17.744
	CRR073316	Gold flowering 2	25.575
	CRR073317	Gold flowering 3	30.021
	CRR073318	Tawny withering 1	47.094
	CRR073319	Tawny withering 2	29.300
	CRR073320	Tawny withering 3	48.497