Gene detail

Detail information of GWHGAAZE011573

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010089211.1	9.5807E-148	hypothetical protein L484_005702 [Morus notabilis]
Swissprot	tr\|Q9SQ57\|PXG_SESIN	3E-138	Peroxygenase
trEMBL	tr\|W9QHH5\|W9QHH5_9ROSA	4E-148	Uncharacterized protein {ECO:0000313\|EMBL:EXB37489.1}
TAIR10	AT4G26740.1	5E-105	seed gene 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	66085985	66091376	-
GWHAAZE00000003	mRNA	66085985	66091376	-
GWHAAZE00000003	exon	66091045	66091376	-
GWHAAZE00000003	exon	66089031	66089180	-
GWHAAZE00000003	exon	66088479	66088564	-
GWHAAZE00000003	exon	66087092	66087186	-
GWHAAZE00000003	exon	66086840	66086965	-
GWHAAZE00000003	exon	66085985	66086138	-
GWHAAZE00000003	five_prime_UTR	66091202	66091376	-
GWHAAZE00000003	CDS	66091045	66091201	-
GWHAAZE00000003	CDS	66089031	66089180	-
GWHAAZE00000003	CDS	66088479	66088564	-
GWHAAZE00000003	CDS	66087092	66087186	-
GWHAAZE00000003	CDS	66086840	66086965	-
GWHAAZE00000003	CDS	66085985	66086138	-

Transcript Sequence
>GWHTAAZE011585 TCTTTGGTTGGTTACACATTTCTTCCGCCTCTGCTGCTCTTTCTCACATTATTATCAACTCAATTACTCAACTCTACCATCTCAAAAGCTCAGTTGTCAAAACCATAAGCAATTCACCAAGTAGAGAAAAATAATTCGGAGAGAGTGGGGGGAGTTTTTGTAAGAGAAAGGCAAAATGGCAGCAACTGCGGTGGTAGACAGGATTCCGGCGGCGGCAGCGGCGGCAGCAACAGTGGTCGACAGGAATTCGATGGCGACGGAGGCGCCTCTTGCGCCAGTTACCGTCGAGCGCAAGGTCAGGACTGACCTTGAAATTTCTCTTCCTAAGCCCTATATGGCTAGGGCCTTGACGGCTCCTGATACAGACCACCCAAATGGGACGCCTGGCCATAGGCATTATGGCATGAGTGTTATGCAGCAACATGTAGCCTTCTTTGACCAGGACGACAATGGCATTATTTACCCTTGGGAGACTTATGCTGGACTGCGTCAAATTGGTTTTAATATGATCGTGTCTCTTATCATGGCTGTTGTTATCAATGGAGGTTTGAGTTATGCAACTCTCCCAGGTTGGATCCCATCTCCTTTCCTTCCTATATACATATACAACATCCATAAGTCCAAACATGGGAGTGACTCGGGTACATACGATACTGAAGGAAGGTATATGCCCGTGAACCTCGAGAATATTTTCAGCAAGTATGCGCGTACAGTTCCGGATAAGCTGACATTTGGAGAGCTTTGGGACATGACAGAAGGCAATCGCAATGCATTTGACCTTTTTGGATGGATTGCGAGTAAGATGGAGTGGGGAATTTTGTACATTCTAGCTAGGGATGAAGAAGGCTTTCTATCGAAAGAGGCAATTAGGCGCTGTTTCGATGGTAGTTTATTTGAGTACTGTGCCAAGATGCATATGGGTGCTGAGAGCAAGATGGGCTGA

Network for GWHGAAZE011573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05042.14	Caleosin	77	243	5.70E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17991	PXG	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.292
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.292
	SRR3591709	Stem	0.296
	SRR3591710	White floral bud	0.354
	SRR3591711	White flower	0.279
	SRR3591712	Green floral bud	0.649
	SRR3591713	Yellow flower	0.500
SRP173429	SRR8316895	Juvenile bud stage	20.204
	SRR8316896	Juvenile bud stage	29.090
	SRR8316897	Juvenile bud stage	9.740
	SRR8316894	Third green stage	6.051
	SRR8316900	Third green stage	0.905
	SRR8316901	Third green stage	4.994
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.037
	SRR8316905	Silver flowering stage	0.073
	SRR8316906	Gold flowering stage	0.003
	SRR8316907	Gold flowering stage	0.447
	SRR8316908	Gold flowering stage	0.415
SRP132670	SRR6706286	Control	2.906
	SRR6706287	Light intensity 50%	2.852
	SRR6706288	Light intensity 20%	0.351
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.793
	CNS0095593	Slightly white alabastrum(diploid) 2	2.262
	CNS0095594	Slightly white alabastrum(diploid) 3	15.431
	CNS0095595	Whole white alabastrum(diploid) 2	0.219
	CNS0095596	Whole white alabastrum(diploid) 3	1.320
	CNS0095597	Whole white alabastrum(diploid) 4	0.324
	CNS0095598	Silvery flower (diploied) 1	0.055
	CNS0095599	Silvery flower (diploied) 2	0.143
	CNS0095600	Silvery flower (diploied) 3	0.085
	CNS0095601	Golden flower (diploid) 1	0.163
	CNS0095602	Golden flower (diploid) 2	0.496
	CNS0095603	Golden flower (diploid) 3	0.557
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.654
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.046
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.344
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.630
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.794
	CNS0095610	Silvery flower (tetraploid) 1	0.168
	CNS0095611	Silvery flower (tetraploid) 2	0.220
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.259
	CNS0095614	Golden flower (tetraploid) 2	0.151
	CNS0095615	Golden flower (tetraploid) 3	0.059
CRA001975	CRR073297	Stem 1	23.695
	CRR073298	Stem 2	27.243
	CRR073299	Stem 3	44.786
	CRR073300	Leaf 1	0.171
	CRR073301	Leaf 2	0.619
	CRR073302	Leaf 3	1.653
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.054
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.045
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.055
	CRR073310	Second white 2	0.027
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.275
	CRR073313	Silver flowering 2	0.047
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000