Detail information of GWHGAAZE011539


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285452.10PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera]
Swissprottr|Q9AV81|PRP19_ORYSJ0Pre-mRNA-processing factor 19 {ECO:0000305}
trEMBLtr|D7SZN5|D7SZN5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI23714.3}
TAIR10AT1G04510.10MOS4-associated complex 3A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene6484734764867081-
GWHAAZE00000003mRNA6484734764867081-
GWHAAZE00000003exon6486697464867081-
GWHAAZE00000003exon6486596864866039-
GWHAAZE00000003exon6486578464865846-
GWHAAZE00000003exon6486493064865016-
GWHAAZE00000003exon6486046864860615-
GWHAAZE00000003exon6486026064860381-
GWHAAZE00000003exon6486005164860167-
GWHAAZE00000003exon6485406064854155-
GWHAAZE00000003exon6485389264853951-
GWHAAZE00000003exon6485331264853386-
GWHAAZE00000003exon6485262164852695-
GWHAAZE00000003exon6485024364850347-
GWHAAZE00000003exon6485005064850166-
GWHAAZE00000003exon6484950464849581-
GWHAAZE00000003exon6484932264849418-
GWHAAZE00000003exon6484823764848292-
GWHAAZE00000003exon6484734764847508-
GWHAAZE00000003CDS6486697464867081-
GWHAAZE00000003CDS6486596864866039-
GWHAAZE00000003CDS6486578464865846-
GWHAAZE00000003CDS6486493064865016-
GWHAAZE00000003CDS6486046864860615-
GWHAAZE00000003CDS6486026064860381-
GWHAAZE00000003CDS6486005164860167-
GWHAAZE00000003CDS6485406064854155-
GWHAAZE00000003CDS6485389264853951-
GWHAAZE00000003CDS6485331264853386-
GWHAAZE00000003CDS6485262164852695-
GWHAAZE00000003CDS6485024364850347-
GWHAAZE00000003CDS6485005064850166-
GWHAAZE00000003CDS6484950464849581-
GWHAAZE00000003CDS6484932264849418-
GWHAAZE00000003CDS6484823764848292-
GWHAAZE00000003CDS6484734764847508-
Transcript Sequence

Network for GWHGAAZE011539

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08606.12Prp19691341.90E-29
PF00400.33WD402602974.00E-07
PF00400.33WD404174520.00084
PF00400.33WD404985330.00086
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10599PRPF19, PRP19 Spliceosome map03040
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName
GO:0016567biological_processprotein ubiquitination
GO:0005515molecular_functionprotein binding
GO:0004842molecular_functionubiquitin-protein transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf79.200
SRR3591706second leaf46.622
SRR3591707mature leaf32.709
SRR3591708Shoot apex84.602
SRR3591709Stem43.710
SRR3591710White floral bud45.249
SRR3591711White flower56.167
SRR3591712Green floral bud56.023
SRR3591713Yellow flower37.457
SRP173429 SRR8316895Juvenile bud stage 42.401
SRR8316896Juvenile bud stage 55.525
SRR8316897Juvenile bud stage 25.777
SRR8316894Third green stage 21.265
SRR8316900Third green stage 57.476
SRR8316901Third green stage 48.354
SRR8316898Complete white stage 18.205
SRR8316899Complete white stage 70.327
SRR8316903Complete white stage 27.777
SRR8316902Silver flowering stage17.210
SRR8316904Silver flowering stage23.595
SRR8316905Silver flowering stage10.231
SRR8316906Gold flowering stage 34.594
SRR8316907Gold flowering stage 31.740
SRR8316908Gold flowering stage 39.453
SRP132670SRR6706286Control68.417
SRR6706287Light intensity 50%73.043
SRR6706288Light intensity 20%76.483
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.715
CNS0095593Slightly white alabastrum(diploid) 234.783
CNS0095594Slightly white alabastrum(diploid) 328.524
CNS0095595Whole white alabastrum(diploid) 228.843
CNS0095596Whole white alabastrum(diploid) 326.179
CNS0095597Whole white alabastrum(diploid) 422.731
CNS0095598Silvery flower (diploied) 146.755
CNS0095599Silvery flower (diploied) 236.633
CNS0095600Silvery flower (diploied) 346.606
CNS0095601Golden flower (diploid) 133.889
CNS0095602Golden flower (diploid) 247.558
CNS0095603Golden flower (diploid) 345.492
CNS0095604Slightly white alabastrum(tetraploid) 140.610
CNS0095605Slightly white alabastrum(tetraploid) 233.637
CNS0095606Slightly white alabastrum(tetraploid) 379.640
CNS0095607Whole white alabastrum(tetraploid) 120.778
CNS0095608Whole white alabastrum(tetraploid) 212.967
CNS0095609Whole white alabastrum(tetraploid) 347.460
CNS0095610Silvery flower (tetraploid) 143.161
CNS0095611Silvery flower (tetraploid) 248.182
CNS0095612Silvery flower (tetraploid) 330.448
CNS0095613Golden flower (tetraploid) 114.667
CNS0095614Golden flower (tetraploid) 236.721
CNS0095615Golden flower (tetraploid) 322.781
CRA001975CRR073297Stem 184.968
CRR073298Stem 274.632
CRR073299Stem 381.283
CRR073300Leaf 172.560
CRR073301Leaf 266.889
CRR073302Leaf 373.533
CRR073303Juvenile bud 167.416
CRR073304Juvenile bud 252.074
CRR073305Juvenile bud 381.320
CRR073306Third green 112.465
CRR073307Third green 218.319
CRR073308Third green 320.996
CRR073309Second white 124.739
CRR073310Second white 221.834
CRR073311Second white 322.853
CRR073312Silver flowering 121.221
CRR073313Silver flowering 224.141
CRR073314Silver flowering 315.311
CRR073315Gold flowering 132.968
CRR073316Gold flowering 241.830
CRR073317Gold flowering 340.594
CRR073318Tawny withering 152.631
CRR073319Tawny withering 246.135
CRR073320Tawny withering 364.188