Gene detail

Detail information of GWHGAAZE011502

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007035291.1	1.0958E-116	GLU-ADT subunit B isoform 1 [Theobroma cacao]
Swissprot	tr\|B9SQR9\|GATB_RICCO	8E-113	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03147} (Precursor)
trEMBL	tr\|A0A061ENK9\|A0A061ENK9_THECC	4E-117	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000256\|HAMAP-Rule:MF_03147}
TAIR10	AT1G48520.1	2E-80	GLU-ADT subunit B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	63937113	63937775	+
GWHAAZE00000003	mRNA	63937113	63937775	+
GWHAAZE00000003	exon	63937113	63937775	+
GWHAAZE00000003	CDS	63937113	63937775	+

Transcript Sequence
>GWHTAAZE011514 ATGGCTTTGACATTCTTTAGAGGGATTCAAACTCGCCCTCTTTGGCTCTACCCATCTGCTTATCTTTCAAGAAAACATGTTTTCTATTGCACAATGGAAACCACAAATACCCAAATGCCAACACATGAGAAAAAACAAAACCCTCAATTGAAAGTTTCACCCAAAACCCAACCCAAAAACCCTAATACAATCTTGAAAAACTATGAAGCAATTATAGGTATTGAAACCCATGTTCAATTATCCACTCTAACAAAGGCATTTTGTAGTTGCCCTTACAATTATGGGTCTCAACCAAACACTAGCATTTGCCCCATTTGTATGGGTTTGCCTGGGGCTTTGCCTGTTATGAACAAAAAGGTTATCGAGTTTGCCGTTAAGCTTGGTTTAGCCCTGAATTCTGAATTGTGTTTTAATTCGAAGTTTGATAGAAAACAGTATTTTTACCCTGACCTTCCAAAAGGGTACCAAATATCTCAGTTTGATATACCGATTGCAACGGGTGGGTTCATTGATTTGGATCTTCCGGTCGAGTTTGGGGGTGGGCATAGGAGGTTTGGGATTACTAGGGTTCATATGGAGGAGGATGCCGGGAAACTGCTTCATACAGGAAATGGGAGTTATTCTCAGGAAAGTACTGTTCCTTTTATTTTGAAGTCGCTATGA

Network for GWHGAAZE011502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02934.16	GatB_N	71	204	3.40E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02434	gatB, PET112	Metabolic pathways	map01100
K02434	gatB, PET112	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0016874	molecular_function	ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.621
	SRR3591706	second leaf	38.498
	SRR3591707	mature leaf	31.528
	SRR3591708	Shoot apex	23.781
	SRR3591709	Stem	12.457
	SRR3591710	White floral bud	12.157
	SRR3591711	White flower	6.932
	SRR3591712	Green floral bud	17.060
	SRR3591713	Yellow flower	7.303
SRP173429	SRR8316895	Juvenile bud stage	8.310
	SRR8316896	Juvenile bud stage	8.352
	SRR8316897	Juvenile bud stage	5.627
	SRR8316894	Third green stage	3.715
	SRR8316900	Third green stage	15.665
	SRR8316901	Third green stage	10.749
	SRR8316898	Complete white stage	3.098
	SRR8316899	Complete white stage	10.563
	SRR8316903	Complete white stage	4.501
	SRR8316902	Silver flowering stage	2.187
	SRR8316904	Silver flowering stage	3.735
	SRR8316905	Silver flowering stage	1.215
	SRR8316906	Gold flowering stage	5.486
	SRR8316907	Gold flowering stage	3.437
	SRR8316908	Gold flowering stage	6.949
SRP132670	SRR6706286	Control	8.596
	SRR6706287	Light intensity 50%	9.309
	SRR6706288	Light intensity 20%	10.965
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.122
	CNS0095593	Slightly white alabastrum(diploid) 2	2.273
	CNS0095594	Slightly white alabastrum(diploid) 3	2.293
	CNS0095595	Whole white alabastrum(diploid) 2	2.323
	CNS0095596	Whole white alabastrum(diploid) 3	4.799
	CNS0095597	Whole white alabastrum(diploid) 4	4.357
	CNS0095598	Silvery flower (diploied) 1	5.037
	CNS0095599	Silvery flower (diploied) 2	6.345
	CNS0095600	Silvery flower (diploied) 3	6.568
	CNS0095601	Golden flower (diploid) 1	5.402
	CNS0095602	Golden flower (diploid) 2	5.607
	CNS0095603	Golden flower (diploid) 3	6.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.904
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.322
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.033
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.378
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.609
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.307
	CNS0095610	Silvery flower (tetraploid) 1	7.865
	CNS0095611	Silvery flower (tetraploid) 2	9.094
	CNS0095612	Silvery flower (tetraploid) 3	8.398
	CNS0095613	Golden flower (tetraploid) 1	1.834
	CNS0095614	Golden flower (tetraploid) 2	5.077
	CNS0095615	Golden flower (tetraploid) 3	2.009
CRA001975	CRR073297	Stem 1	7.157
	CRR073298	Stem 2	6.091
	CRR073299	Stem 3	5.255
	CRR073300	Leaf 1	6.673
	CRR073301	Leaf 2	6.106
	CRR073302	Leaf 3	2.912
	CRR073303	Juvenile bud 1	3.842
	CRR073304	Juvenile bud 2	6.218
	CRR073305	Juvenile bud 3	4.666
	CRR073306	Third green 1	1.872
	CRR073307	Third green 2	0.737
	CRR073308	Third green 3	0.737
	CRR073309	Second white 1	1.146
	CRR073310	Second white 2	1.425
	CRR073311	Second white 3	2.137
	CRR073312	Silver flowering 1	1.117
	CRR073313	Silver flowering 2	1.983
	CRR073314	Silver flowering 3	0.857
	CRR073315	Gold flowering 1	7.379
	CRR073316	Gold flowering 2	14.048
	CRR073317	Gold flowering 3	10.312
	CRR073318	Tawny withering 1	1.764
	CRR073319	Tawny withering 2	2.830
	CRR073320	Tawny withering 3	3.283