Detail information of GWHGAAZE011413


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG24292.10Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
Swissprottr|Q05046|CH62_CUCMA0Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBLtr|A0A068TSW2|A0A068TSW2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313|EMBL:CDO99385.1}
TAIR10AT3G23990.10heat shock protein 60

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5989472059906307-
GWHAAZE00000003mRNA5989472059906307-
GWHAAZE00000003exon5990614959906307-
GWHAAZE00000003exon5990502359905182-
GWHAAZE00000003exon5990450259904566-
GWHAAZE00000003exon5990398559904080-
GWHAAZE00000003exon5990118059901284-
GWHAAZE00000003exon5990068759900773-
GWHAAZE00000003exon5990050259900591-
GWHAAZE00000003exon5990032559900405-
GWHAAZE00000003exon5990015559900223-
GWHAAZE00000003exon5989952459899601-
GWHAAZE00000003exon5989927359899368-
GWHAAZE00000003exon5989854359898642-
GWHAAZE00000003exon5989653459896637-
GWHAAZE00000003exon5989628359896388-
GWHAAZE00000003exon5989494059895018-
GWHAAZE00000003exon5989472059894834-
GWHAAZE00000003CDS5990614959906307-
GWHAAZE00000003CDS5990502359905182-
GWHAAZE00000003CDS5990450259904566-
GWHAAZE00000003CDS5990398559904080-
GWHAAZE00000003CDS5990118059901284-
GWHAAZE00000003CDS5990068759900773-
GWHAAZE00000003CDS5990050259900591-
GWHAAZE00000003CDS5990032559900405-
GWHAAZE00000003CDS5990015559900223-
GWHAAZE00000003CDS5989952459899601-
GWHAAZE00000003CDS5989927359899368-
GWHAAZE00000003CDS5989854359898642-
GWHAAZE00000003CDS5989653459896637-
GWHAAZE00000003CDS5989628359896388-
GWHAAZE00000003CDS5989494059895018-
GWHAAZE00000003CDS5989472059894834-
Transcript Sequence

Network for GWHGAAZE011413

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.25Cpn60_TCP1421276.70E-21
PF00118.25Cpn60_TCP11275063.00E-53
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04077groEL, HSPD1 RNA degradation map03018
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0042026biological_processprotein refolding
GO:0006457biological_processprotein folding
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.869
SRR3591706second leaf3.106
SRR3591707mature leaf2.712
SRR3591708Shoot apex23.780
SRR3591709Stem11.448
SRR3591710White floral bud5.786
SRR3591711White flower13.594
SRR3591712Green floral bud19.483
SRR3591713Yellow flower5.351
SRP173429 SRR8316895Juvenile bud stage 35.251
SRR8316896Juvenile bud stage 44.788
SRR8316897Juvenile bud stage 23.663
SRR8316894Third green stage 15.628
SRR8316900Third green stage 46.005
SRR8316901Third green stage 29.399
SRR8316898Complete white stage 3.434
SRR8316899Complete white stage 23.747
SRR8316903Complete white stage 6.954
SRR8316902Silver flowering stage8.639
SRR8316904Silver flowering stage7.995
SRR8316905Silver flowering stage3.950
SRR8316906Gold flowering stage 17.986
SRR8316907Gold flowering stage 16.968
SRR8316908Gold flowering stage 13.621
SRP132670SRR6706286Control45.202
SRR6706287Light intensity 50%41.836
SRR6706288Light intensity 20%45.508
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.958
CNS0095593Slightly white alabastrum(diploid) 233.797
CNS0095594Slightly white alabastrum(diploid) 330.276
CNS0095595Whole white alabastrum(diploid) 226.340
CNS0095596Whole white alabastrum(diploid) 329.436
CNS0095597Whole white alabastrum(diploid) 418.345
CNS0095598Silvery flower (diploied) 119.187
CNS0095599Silvery flower (diploied) 216.036
CNS0095600Silvery flower (diploied) 318.143
CNS0095601Golden flower (diploid) 116.850
CNS0095602Golden flower (diploid) 213.405
CNS0095603Golden flower (diploid) 315.304
CNS0095604Slightly white alabastrum(tetraploid) 151.360
CNS0095605Slightly white alabastrum(tetraploid) 241.403
CNS0095606Slightly white alabastrum(tetraploid) 397.612
CNS0095607Whole white alabastrum(tetraploid) 117.885
CNS0095608Whole white alabastrum(tetraploid) 214.405
CNS0095609Whole white alabastrum(tetraploid) 367.286
CNS0095610Silvery flower (tetraploid) 127.745
CNS0095611Silvery flower (tetraploid) 228.131
CNS0095612Silvery flower (tetraploid) 323.868
CNS0095613Golden flower (tetraploid) 110.528
CNS0095614Golden flower (tetraploid) 221.586
CNS0095615Golden flower (tetraploid) 34.474
CRA001975CRR073297Stem 148.321
CRR073298Stem 238.174
CRR073299Stem 340.002
CRR073300Leaf 127.919
CRR073301Leaf 227.710
CRR073302Leaf 331.811
CRR073303Juvenile bud 125.228
CRR073304Juvenile bud 213.552
CRR073305Juvenile bud 325.269
CRR073306Third green 12.218
CRR073307Third green 21.795
CRR073308Third green 32.801
CRR073309Second white 15.615
CRR073310Second white 27.062
CRR073311Second white 36.311
CRR073312Silver flowering 12.133
CRR073313Silver flowering 22.764
CRR073314Silver flowering 31.509
CRR073315Gold flowering 18.914
CRR073316Gold flowering 214.091
CRR073317Gold flowering 35.571
CRR073318Tawny withering 121.236
CRR073319Tawny withering 215.501
CRR073320Tawny withering 326.392