Detail information of GWHGAAZE011410


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010243653.12.66148E-26PREDICTED: chaperonin CPN60-2, mitochondrial-like [Nelumbo nucifera]
Swissprottr|Q43298|CH62_MAIZE6E-24Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBLtr|V7BHP9|V7BHP9_PHAVU3E-25Uncharacterized protein {ECO:0000313|EMBL:ESW17424.1}
TAIR10AT3G23990.13E-11heat shock protein 60

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5988449259885264-
GWHAAZE00000003mRNA5988449259885264-
GWHAAZE00000003exon5988449259884606-
GWHAAZE00000003exon5988471259884790-
GWHAAZE00000003exon5988518659885264-
GWHAAZE00000003CDS5988518659885264-
GWHAAZE00000003CDS5988471259884790-
GWHAAZE00000003CDS5988449259884606-
Transcript Sequence

Network for GWHGAAZE011410

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04077groEL, HSPD1 RNA degradation map03018
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.333
SRR3591706second leaf0.093
SRR3591707mature leaf0.019
SRR3591708Shoot apex1.558
SRR3591709Stem0.211
SRR3591710White floral bud2.175
SRR3591711White flower1.592
SRR3591712Green floral bud5.162
SRR3591713Yellow flower1.169
SRP173429 SRR8316895Juvenile bud stage 3.226
SRR8316896Juvenile bud stage 15.347
SRR8316897Juvenile bud stage 2.507
SRR8316894Third green stage 3.691
SRR8316900Third green stage 11.010
SRR8316901Third green stage 8.461
SRR8316898Complete white stage 0.928
SRR8316899Complete white stage 7.311
SRR8316903Complete white stage 0.775
SRR8316902Silver flowering stage0.292
SRR8316904Silver flowering stage1.589
SRR8316905Silver flowering stage1.010
SRR8316906Gold flowering stage 1.227
SRR8316907Gold flowering stage 1.388
SRR8316908Gold flowering stage 0.851
SRP132670SRR6706286Control6.089
SRR6706287Light intensity 50%6.051
SRR6706288Light intensity 20%2.394
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.790
CNS0095593Slightly white alabastrum(diploid) 224.775
CNS0095594Slightly white alabastrum(diploid) 318.684
CNS0095595Whole white alabastrum(diploid) 24.627
CNS0095596Whole white alabastrum(diploid) 316.358
CNS0095597Whole white alabastrum(diploid) 49.019
CNS0095598Silvery flower (diploied) 16.372
CNS0095599Silvery flower (diploied) 28.285
CNS0095600Silvery flower (diploied) 34.471
CNS0095601Golden flower (diploid) 18.211
CNS0095602Golden flower (diploid) 24.270
CNS0095603Golden flower (diploid) 39.606
CNS0095604Slightly white alabastrum(tetraploid) 131.516
CNS0095605Slightly white alabastrum(tetraploid) 229.944
CNS0095606Slightly white alabastrum(tetraploid) 343.954
CNS0095607Whole white alabastrum(tetraploid) 16.798
CNS0095608Whole white alabastrum(tetraploid) 213.575
CNS0095609Whole white alabastrum(tetraploid) 330.348
CNS0095610Silvery flower (tetraploid) 113.717
CNS0095611Silvery flower (tetraploid) 210.139
CNS0095612Silvery flower (tetraploid) 322.567
CNS0095613Golden flower (tetraploid) 17.776
CNS0095614Golden flower (tetraploid) 28.863
CNS0095615Golden flower (tetraploid) 31.758
CRA001975CRR073297Stem 110.960
CRR073298Stem 28.721
CRR073299Stem 37.960
CRR073300Leaf 13.283
CRR073301Leaf 21.680
CRR073302Leaf 36.715
CRR073303Juvenile bud 17.439
CRR073304Juvenile bud 22.016
CRR073305Juvenile bud 36.856
CRR073306Third green 10.434
CRR073307Third green 20.017
CRR073308Third green 30.710
CRR073309Second white 11.906
CRR073310Second white 22.680
CRR073311Second white 30.158
CRR073312Silver flowering 10.260
CRR073313Silver flowering 22.061
CRR073314Silver flowering 30.549
CRR073315Gold flowering 12.764
CRR073316Gold flowering 22.654
CRR073317Gold flowering 31.069
CRR073318Tawny withering 16.008
CRR073319Tawny withering 23.079
CRR073320Tawny withering 36.009