Gene detail

Detail information of GWHGAAZE011358

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004310220.1	1.03466E-74	PREDICTED: protein kinase APK1B, chloroplastic-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q8H186\|Y3545_ARATH	9E-28	Probable receptor-like protein kinase At3g55450
trEMBL	tr\|W9QW66\|W9QW66_9ROSA	3E-72	Serine/threonine-protein kinase BIK1 {ECO:0000313\|EMBL:EXB40298.1}
TAIR10	AT3G55450.2	3E-25	PBS1-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	58591629	58594160	+
GWHAAZE00000003	mRNA	58591629	58594160	+
GWHAAZE00000003	exon	58591629	58591868	+
GWHAAZE00000003	exon	58591961	58592120	+
GWHAAZE00000003	exon	58593198	58593325	+
GWHAAZE00000003	exon	58593429	58593561	+
GWHAAZE00000003	exon	58593796	58594160	+
GWHAAZE00000003	CDS	58591629	58591868	+
GWHAAZE00000003	CDS	58591961	58592120	+
GWHAAZE00000003	CDS	58593198	58593325	+
GWHAAZE00000003	CDS	58593429	58593561	+
GWHAAZE00000003	CDS	58593796	58594160	+

Transcript Sequence
>GWHTAAZE011370 GTGGCAAGGACACAAATCGACAACAAATGGCAGTCTAGGGCGCCTATTTCATGTACATCGGACGTCTTGGAAGGGCTGACTGACAATTTCAAGGAAGAAAACTTTATTGGACCTACAACATTTGGTAAGGTGTACCGAGGAAAGCTTAAGCTCGATCCAATTGGAGCCGAAACAAGAGATGTGACAGTAAAGATTTGGGATGATAATGTAGATGTTATTGATGATGGTAAAGTCACCGAGGAAGAAGTGAAGTTTCTATCTAATCGTAATGTGAATTACCACCCTAACTTGGCGAAGTTGATAGGCTTTTGCAGCAATGGCTATTGCAGCGAGGGACCGGTGAATGGTGTTGTTTATGAGCTCAACCCGTTAGATAGTTTGTATAATCATACAGCAAAAGACAACTTTTCTTGGATCCAGAGGATTAAAGTTTCCCTTGAATTTGCCAAGCTCCTTGAATTTCTGCATGAGGGCGAATGGCCGTTTATGGTCTTCAATATCGATTCAGCTAATATTATGCTTGATCAGGCATGCAATCCAGTACTGATAGACTTTGGGCTGCTTAGTGGTGGGATGATGGGTGGACAACGTTTTTCACAGGAGTTTCAACATATGTCACTTGGTTACTGTGACATGTTTTTAGATTTGTTTTCGTTACAAAGAATAAAGAGGATATGGAGCGATGTGTTTTCATATGGTCTGATTCTTCTGGGGCTAATAGCAAAGAGAGTTGACTTGAAGGAGGATCTGGTAAAATACATGTATAAAACATTGGATGAGTGGGCCTACGAAGCATGCAAGCCTCATTGCTCGCTTGTACACGCTAGCCTAACGAAAGACAAGGATTATGATGAGTCTGATGCTACCGCGTTGACTGAGCTGGCGATGCGCTGTATAAATGCAGATAATCCAAAAGAGCGCCCCACAATGAGTCAAGTTGTCAATTGCCTCAAGAAGTTAAGAGCTTTTCAAGTTCTTAAGGAGAATGCACACAGAGATAAAAGGATGAAATTTGGGGGCGTGTGA

Network for GWHGAAZE011358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	33	317	1.40E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.766
	SRR3591706	second leaf	1.783
	SRR3591707	mature leaf	1.983
	SRR3591708	Shoot apex	2.994
	SRR3591709	Stem	3.271
	SRR3591710	White floral bud	4.409
	SRR3591711	White flower	4.370
	SRR3591712	Green floral bud	3.989
	SRR3591713	Yellow flower	3.000
SRP173429	SRR8316895	Juvenile bud stage	3.386
	SRR8316896	Juvenile bud stage	5.293
	SRR8316897	Juvenile bud stage	2.036
	SRR8316894	Third green stage	2.214
	SRR8316900	Third green stage	6.971
	SRR8316901	Third green stage	6.772
	SRR8316898	Complete white stage	3.396
	SRR8316899	Complete white stage	7.128
	SRR8316903	Complete white stage	3.616
	SRR8316902	Silver flowering stage	2.885
	SRR8316904	Silver flowering stage	4.605
	SRR8316905	Silver flowering stage	2.216
	SRR8316906	Gold flowering stage	6.549
	SRR8316907	Gold flowering stage	5.522
	SRR8316908	Gold flowering stage	4.404
SRP132670	SRR6706286	Control	6.939
	SRR6706287	Light intensity 50%	5.699
	SRR6706288	Light intensity 20%	6.146
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.847
	CNS0095593	Slightly white alabastrum(diploid) 2	6.284
	CNS0095594	Slightly white alabastrum(diploid) 3	8.494
	CNS0095595	Whole white alabastrum(diploid) 2	6.465
	CNS0095596	Whole white alabastrum(diploid) 3	7.235
	CNS0095597	Whole white alabastrum(diploid) 4	4.823
	CNS0095598	Silvery flower (diploied) 1	5.513
	CNS0095599	Silvery flower (diploied) 2	5.815
	CNS0095600	Silvery flower (diploied) 3	6.496
	CNS0095601	Golden flower (diploid) 1	4.874
	CNS0095602	Golden flower (diploid) 2	3.973
	CNS0095603	Golden flower (diploid) 3	4.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.264
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.959
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.149
	CNS0095610	Silvery flower (tetraploid) 1	8.879
	CNS0095611	Silvery flower (tetraploid) 2	9.353
	CNS0095612	Silvery flower (tetraploid) 3	10.323
	CNS0095613	Golden flower (tetraploid) 1	5.494
	CNS0095614	Golden flower (tetraploid) 2	7.993
	CNS0095615	Golden flower (tetraploid) 3	12.082
CRA001975	CRR073297	Stem 1	5.038
	CRR073298	Stem 2	4.527
	CRR073299	Stem 3	3.824
	CRR073300	Leaf 1	7.078
	CRR073301	Leaf 2	3.708
	CRR073302	Leaf 3	4.524
	CRR073303	Juvenile bud 1	3.329
	CRR073304	Juvenile bud 2	1.864
	CRR073305	Juvenile bud 3	3.925
	CRR073306	Third green 1	1.434
	CRR073307	Third green 2	1.729
	CRR073308	Third green 3	2.867
	CRR073309	Second white 1	1.100
	CRR073310	Second white 2	1.413
	CRR073311	Second white 3	1.592
	CRR073312	Silver flowering 1	2.254
	CRR073313	Silver flowering 2	1.530
	CRR073314	Silver flowering 3	2.434
	CRR073315	Gold flowering 1	2.456
	CRR073316	Gold flowering 2	1.950
	CRR073317	Gold flowering 3	1.607
	CRR073318	Tawny withering 1	2.259
	CRR073319	Tawny withering 2	2.827
	CRR073320	Tawny withering 3	1.999