Detail information of GWHGAAZE011350


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004289729.10PREDICTED: probable pectate lyase 15-like [Fragaria vesca subsp. vesca]
Swissprottr|Q944R1|PLY15_ARATH0Probable pectate lyase 15 (Precursor)
trEMBLtr|Q94FT5|Q94FT5_FRAAN0Pectate lyase {ECO:0000256|RuleBase:RU361123} (Fragment)
TAIR10AT1G04680.10Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5846705858469087+
GWHAAZE00000003mRNA5846705858469087+
GWHAAZE00000003exon5846705858467735+
GWHAAZE00000003exon5846783858467941+
GWHAAZE00000003exon5846811958468257+
GWHAAZE00000003exon5846886658469087+
GWHAAZE00000003CDS5846705858467735+
GWHAAZE00000003CDS5846783858467941+
GWHAAZE00000003CDS5846811958468257+
GWHAAZE00000003CDS5846886658469087+
Transcript Sequence

Network for GWHGAAZE011350

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41122954.70E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf47.247
SRR3591706second leaf21.614
SRR3591707mature leaf1.395
SRR3591708Shoot apex60.848
SRR3591709Stem46.182
SRR3591710White floral bud2.065
SRR3591711White flower2.422
SRR3591712Green floral bud4.291
SRR3591713Yellow flower0.380
SRP173429 SRR8316895Juvenile bud stage 6.048
SRR8316896Juvenile bud stage 7.284
SRR8316897Juvenile bud stage 1.059
SRR8316894Third green stage 3.421
SRR8316900Third green stage 2.729
SRR8316901Third green stage 3.161
SRR8316898Complete white stage 0.113
SRR8316899Complete white stage 1.500
SRR8316903Complete white stage 0.659
SRR8316902Silver flowering stage0.040
SRR8316904Silver flowering stage0.204
SRR8316905Silver flowering stage0.156
SRR8316906Gold flowering stage 1.123
SRR8316907Gold flowering stage 1.657
SRR8316908Gold flowering stage 2.290
SRP132670SRR6706286Control2.295
SRR6706287Light intensity 50%2.228
SRR6706288Light intensity 20%2.202
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.942
CNS0095593Slightly white alabastrum(diploid) 27.896
CNS0095594Slightly white alabastrum(diploid) 35.935
CNS0095595Whole white alabastrum(diploid) 22.072
CNS0095596Whole white alabastrum(diploid) 31.872
CNS0095597Whole white alabastrum(diploid) 41.566
CNS0095598Silvery flower (diploied) 16.764
CNS0095599Silvery flower (diploied) 21.716
CNS0095600Silvery flower (diploied) 30.311
CNS0095601Golden flower (diploid) 12.798
CNS0095602Golden flower (diploid) 21.332
CNS0095603Golden flower (diploid) 31.560
CNS0095604Slightly white alabastrum(tetraploid) 14.810
CNS0095605Slightly white alabastrum(tetraploid) 23.047
CNS0095606Slightly white alabastrum(tetraploid) 39.073
CNS0095607Whole white alabastrum(tetraploid) 12.709
CNS0095608Whole white alabastrum(tetraploid) 20.430
CNS0095609Whole white alabastrum(tetraploid) 31.249
CNS0095610Silvery flower (tetraploid) 10.270
CNS0095611Silvery flower (tetraploid) 20.842
CNS0095612Silvery flower (tetraploid) 30.937
CNS0095613Golden flower (tetraploid) 10.022
CNS0095614Golden flower (tetraploid) 20.453
CNS0095615Golden flower (tetraploid) 30.055
CRA001975CRR073297Stem 127.968
CRR073298Stem 228.002
CRR073299Stem 362.282
CRR073300Leaf 15.055
CRR073301Leaf 26.445
CRR073302Leaf 310.251
CRR073303Juvenile bud 12.131
CRR073304Juvenile bud 20.469
CRR073305Juvenile bud 32.172
CRR073306Third green 10.411
CRR073307Third green 20.245
CRR073308Third green 30.265
CRR073309Second white 10.607
CRR073310Second white 20.294
CRR073311Second white 30.181
CRR073312Silver flowering 10.083
CRR073313Silver flowering 20.297
CRR073314Silver flowering 30.142
CRR073315Gold flowering 12.119
CRR073316Gold flowering 22.442
CRR073317Gold flowering 34.259
CRR073318Tawny withering 1165.065
CRR073319Tawny withering 270.704
CRR073320Tawny withering 3147.709