Detail information of GWHGAAZE011251


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010258223.10PREDICTED: splicing factor 3B subunit 1 [Nelumbo nucifera]
trEMBLtr|F6HQT0|F6HQT0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57161.1}
TAIR10AT5G64270.10splicing factor, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5477666654780487+
GWHAAZE00000003mRNA5477666654780487+
GWHAAZE00000003exon5477666654777452+
GWHAAZE00000003exon5477748354780487+
GWHAAZE00000003CDS5477666654777452+
GWHAAZE00000003CDS5477748354780487+
Transcript Sequence

Network for GWHGAAZE011251

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08920.11SF3b12784081.10E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12828SF3B1, SAP155 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.586
SRR3591706second leaf4.611
SRR3591707mature leaf5.633
SRR3591708Shoot apex5.992
SRR3591709Stem6.081
SRR3591710White floral bud6.745
SRR3591711White flower8.731
SRR3591712Green floral bud6.019
SRR3591713Yellow flower6.717
SRP173429 SRR8316895Juvenile bud stage 13.400
SRR8316896Juvenile bud stage 19.421
SRR8316897Juvenile bud stage 8.056
SRR8316894Third green stage 9.153
SRR8316900Third green stage 20.777
SRR8316901Third green stage 19.958
SRR8316898Complete white stage 6.571
SRR8316899Complete white stage 22.343
SRR8316903Complete white stage 19.672
SRR8316902Silver flowering stage8.822
SRR8316904Silver flowering stage14.676
SRR8316905Silver flowering stage6.949
SRR8316906Gold flowering stage 22.151
SRR8316907Gold flowering stage 21.583
SRR8316908Gold flowering stage 23.788
SRP132670SRR6706286Control21.754
SRR6706287Light intensity 50%21.156
SRR6706288Light intensity 20%21.567
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.221
CNS0095593Slightly white alabastrum(diploid) 213.356
CNS0095594Slightly white alabastrum(diploid) 312.833
CNS0095595Whole white alabastrum(diploid) 212.350
CNS0095596Whole white alabastrum(diploid) 39.318
CNS0095597Whole white alabastrum(diploid) 412.069
CNS0095598Silvery flower (diploied) 125.802
CNS0095599Silvery flower (diploied) 218.523
CNS0095600Silvery flower (diploied) 338.105
CNS0095601Golden flower (diploid) 121.010
CNS0095602Golden flower (diploid) 242.069
CNS0095603Golden flower (diploid) 342.123
CNS0095604Slightly white alabastrum(tetraploid) 115.370
CNS0095605Slightly white alabastrum(tetraploid) 211.462
CNS0095606Slightly white alabastrum(tetraploid) 339.182
CNS0095607Whole white alabastrum(tetraploid) 111.643
CNS0095608Whole white alabastrum(tetraploid) 27.726
CNS0095609Whole white alabastrum(tetraploid) 324.947
CNS0095610Silvery flower (tetraploid) 135.189
CNS0095611Silvery flower (tetraploid) 237.126
CNS0095612Silvery flower (tetraploid) 332.989
CNS0095613Golden flower (tetraploid) 116.863
CNS0095614Golden flower (tetraploid) 229.516
CNS0095615Golden flower (tetraploid) 334.915
CRA001975CRR073297Stem 127.130
CRR073298Stem 227.261
CRR073299Stem 325.903
CRR073300Leaf 126.868
CRR073301Leaf 223.612
CRR073302Leaf 317.856
CRR073303Juvenile bud 119.039
CRR073304Juvenile bud 216.851
CRR073305Juvenile bud 334.843
CRR073306Third green 113.838
CRR073307Third green 29.612
CRR073308Third green 315.436
CRR073309Second white 121.983
CRR073310Second white 220.367
CRR073311Second white 322.423
CRR073312Silver flowering 120.786
CRR073313Silver flowering 224.541
CRR073314Silver flowering 319.106
CRR073315Gold flowering 116.070
CRR073316Gold flowering 221.524
CRR073317Gold flowering 326.622
CRR073318Tawny withering 116.939
CRR073319Tawny withering 213.963
CRR073320Tawny withering 315.488