Detail information of GWHGAAZE011218


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010258223.10PREDICTED: splicing factor 3B subunit 1 [Nelumbo nucifera]
trEMBLtr|F6HQT0|F6HQT0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57161.1}
TAIR10AT5G64270.10splicing factor, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5376545953769280+
GWHAAZE00000003mRNA5376545953769280+
GWHAAZE00000003exon5376545953766245+
GWHAAZE00000003exon5376627653769280+
GWHAAZE00000003CDS5376545953766245+
GWHAAZE00000003CDS5376627653769280+
Transcript Sequence

Network for GWHGAAZE011218

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08920.11SF3b12784089.90E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12828SF3B1, SAP155 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.428
SRR3591706second leaf24.938
SRR3591707mature leaf29.157
SRR3591708Shoot apex34.083
SRR3591709Stem30.632
SRR3591710White floral bud39.733
SRR3591711White flower45.253
SRR3591712Green floral bud35.344
SRR3591713Yellow flower34.159
SRP173429 SRR8316895Juvenile bud stage 13.664
SRR8316896Juvenile bud stage 19.201
SRR8316897Juvenile bud stage 9.022
SRR8316894Third green stage 7.067
SRR8316900Third green stage 21.429
SRR8316901Third green stage 19.221
SRR8316898Complete white stage 5.290
SRR8316899Complete white stage 23.005
SRR8316903Complete white stage 15.861
SRR8316902Silver flowering stage7.561
SRR8316904Silver flowering stage12.077
SRR8316905Silver flowering stage5.486
SRR8316906Gold flowering stage 17.505
SRR8316907Gold flowering stage 16.854
SRR8316908Gold flowering stage 22.691
SRP132670SRR6706286Control22.778
SRR6706287Light intensity 50%21.696
SRR6706288Light intensity 20%22.641
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.462
CNS0095593Slightly white alabastrum(diploid) 214.598
CNS0095594Slightly white alabastrum(diploid) 313.711
CNS0095595Whole white alabastrum(diploid) 212.368
CNS0095596Whole white alabastrum(diploid) 311.895
CNS0095597Whole white alabastrum(diploid) 412.836
CNS0095598Silvery flower (diploied) 122.007
CNS0095599Silvery flower (diploied) 218.285
CNS0095600Silvery flower (diploied) 335.895
CNS0095601Golden flower (diploid) 120.184
CNS0095602Golden flower (diploid) 240.901
CNS0095603Golden flower (diploid) 337.793
CNS0095604Slightly white alabastrum(tetraploid) 117.046
CNS0095605Slightly white alabastrum(tetraploid) 213.470
CNS0095606Slightly white alabastrum(tetraploid) 343.109
CNS0095607Whole white alabastrum(tetraploid) 110.668
CNS0095608Whole white alabastrum(tetraploid) 29.593
CNS0095609Whole white alabastrum(tetraploid) 326.402
CNS0095610Silvery flower (tetraploid) 136.634
CNS0095611Silvery flower (tetraploid) 238.252
CNS0095612Silvery flower (tetraploid) 331.755
CNS0095613Golden flower (tetraploid) 117.231
CNS0095614Golden flower (tetraploid) 228.963
CNS0095615Golden flower (tetraploid) 333.950
CRA001975CRR073297Stem 128.297
CRR073298Stem 227.638
CRR073299Stem 330.069
CRR073300Leaf 126.554
CRR073301Leaf 224.093
CRR073302Leaf 315.112
CRR073303Juvenile bud 122.021
CRR073304Juvenile bud 216.036
CRR073305Juvenile bud 336.738
CRR073306Third green 113.139
CRR073307Third green 28.632
CRR073308Third green 312.494
CRR073309Second white 117.206
CRR073310Second white 214.277
CRR073311Second white 318.442
CRR073312Silver flowering 119.369
CRR073313Silver flowering 223.649
CRR073314Silver flowering 318.249
CRR073315Gold flowering 115.748
CRR073316Gold flowering 222.873
CRR073317Gold flowering 324.208
CRR073318Tawny withering 120.356
CRR073319Tawny withering 215.708
CRR073320Tawny withering 317.163