Gene detail

Detail information of GWHGAAZE011114

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009381749.1	6.2242E-115	PREDICTED: LOW QUALITY PROTEIN: ent-kaur-16-ene synthase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q0JA82\|KS1_ORYSJ	2E-67	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A068UH51\|A0A068UH51_COFCA	3E-72	Coffea canephora DH200=94 genomic scaffold, scaffold_28 {ECO:0000313\|EMBL:CDP07895.1}
TAIR10	AT1G79460.1	3E-56	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	45309600	45328712	-
GWHAAZE00000003	mRNA	45309600	45328712	-
GWHAAZE00000003	exon	45328574	45328712	-
GWHAAZE00000003	exon	45328005	45328185	-
GWHAAZE00000003	exon	45327628	45327827	-
GWHAAZE00000003	exon	45325643	45325712	-
GWHAAZE00000003	exon	45319794	45319892	-
GWHAAZE00000003	exon	45313937	45314152	-
GWHAAZE00000003	exon	45312520	45312670	-
GWHAAZE00000003	exon	45310602	45310850	-
GWHAAZE00000003	exon	45309600	45309950	-
GWHAAZE00000003	CDS	45328574	45328712	-
GWHAAZE00000003	CDS	45328005	45328185	-
GWHAAZE00000003	CDS	45327628	45327827	-
GWHAAZE00000003	CDS	45325643	45325712	-
GWHAAZE00000003	CDS	45319794	45319892	-
GWHAAZE00000003	CDS	45313937	45314152	-
GWHAAZE00000003	CDS	45312520	45312670	-
GWHAAZE00000003	CDS	45310602	45310850	-
GWHAAZE00000003	CDS	45309600	45309950	-

Transcript Sequence
>GWHTAAZE011126 ATGGAGAATCAGAAAGCAGATGGGTCTTGGGGATTAAATCTCAGCCATCCATCACTTGTTAAAGATTCCCTCTCTTCCACACTTGCTTGTGTACTTGCCCTCCAAAAATGGAAGGTGGGAGAACAACTTGTTCAAAAAGGGCTTGACTTTATTGGGACAAAGAAATATGCTGTCATGGACAAGTATCAGTCATCTCCAATTGGGTTTGATGTTATATTTCCGGGCATGATTAATTATGCCAGCGATATGGGTTTGAATCTGCCTCTCGATTCAGCTTTCATTGATATAATGCTCCGCAATCGAGACCTTAAACTTCGAAGTTACAAAGGAAGCCGTCTAGCCTATTTTGCCGAAGGCTTGGAAGAATCATATGATTGGAAAGAGATGATTAAGAACGAACAAAGAAGTAATGGTTCTCTTTTTAATTCACCCGCCACTACAGCAGCTGCGTTGATTCACCTTCACGATGACAAATGTTTTGAATACTTGGACTCCCTCTTGAAAATTCATGGGAATGCTGTGGTGAGACGGACGGAGCATCAACTCACAGAAATTGGGGACGAAGACCGGAGAGCAGCGCAGCTGCACAGGCGTTCTGGTGTTTATAGCAAAGACTTCCTTATTCTTTCGCAACAAGAGTTCAACAAGTGCCAAGCCATACAACTTGAAGAATTTAAGGAATTGGAAAAGTGGGTAAAAGATCACAGAGTTGGTGGTTTGGCCTTCAATAGGCATATAGTGATTAGCAACTATTTCCAAGTAGCTACCCATTATATTCTTCCTGAATTCAGTGATGCTCGCATTATCTGGACGAAATGCTGTGTTATTGCAACCATTATTGATGATCTGTTCGATGTTGACGGTTCCCAAGAAGAATTATCCAACCTCATTGATTTGATTGAAAAATGGGATGGAGTTTCAAATATTTCAGCACTTGGTTATAGTTCCGAACGGATCGAGATCATATTTCTTGCCCTTACAGATATAATAAACGAGCATGCGGCCAAAGGTTTGATAGCGCAAGGACGATGCATAAAGCGTGAGGTTATTCAAATATGGATTAATTTTGTTAAAAGTTGTCTCAAAGAGCTGGAGTGGTGGACTAACAAATCAACACCCACATTTGATGAATATTTGGTGAATGGATGTGAAACGATTGGCATTGGGATTTTTGCTGGTGTTTATTACTTTATCGGAATAGAGCTCTCGGAGGATATTTTAAGAAGCCAAGAATATCAAACTCTATACCGGCATGCAGGGTTGATTGGAAGGCTTTATAATGATTATCAAGGAATAATAGATCAGCGTGATACAGATGAAAGAAAATTAAATGGTTGCTCATTGATAGTAAGTCAGAGTGACGGAGCTACAACTATCGAAGATGCGAGAACAGAAGTGCTGAGAATGATCGAAAGCAGTAGGAGAGAACTATTGCGAATGATGCTTACAGAACCGAGCGATCTTCCAAAAACGTTGATCGAGTCGTTTTTTCACCTATACCAGATAACGTATTACCTTTATACAAAAAATGACGAATTTAGAATCCCAACTAAAAGAGCAGTTGAAGATATCAATGGTCTTCTTTACGAACCTCTCGATCTTCTCCCCTCAAACTTCCCGGAGGAAACTATCGGCACAAGTGATTCCACTTCTTAA

Network for GWHGAAZE011114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03936.17	Terpene_synth_C	208	476	9.30E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0000287	molecular_function	magnesium ion binding
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.039
	SRR3591706	second leaf	0.009
	SRR3591707	mature leaf	0.038
	SRR3591708	Shoot apex	0.031
	SRR3591709	Stem	0.034
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.038
	SRR8316896	Juvenile bud stage	0.065
	SRR8316897	Juvenile bud stage	0.015
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.107
	SRR8316901	Third green stage	0.033
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.146
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.064
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.004
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.104
	CNS0095593	Slightly white alabastrum(diploid) 2	0.012
	CNS0095594	Slightly white alabastrum(diploid) 3	0.054
	CNS0095595	Whole white alabastrum(diploid) 2	0.006
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.005
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.034
	CNS0095602	Golden flower (diploid) 2	0.116
	CNS0095603	Golden flower (diploid) 3	0.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.014
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.017
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.029
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.025
	CRR073320	Tawny withering 3	0.008