Gene detail

Detail information of GWHGAAZE011094

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007029830.1	7.5664E-123	LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
Swissprot	tr\|O22808\|LYK5_ARATH	2E-107	Protein LYK5 (Precursor)
trEMBL	tr\|A0A061F0X1\|A0A061F0X1_THECC	3E-123	LRR receptor-like serine/threonine-protein kinase, putative {ECO:0000313\|EMBL:EOY10332.1}
TAIR10	AT2G33580.1	8E-84	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	42250953	42251930	-
GWHAAZE00000003	mRNA	42250953	42251930	-
GWHAAZE00000003	exon	42251774	42251930	-
GWHAAZE00000003	exon	42251513	42251722	-
GWHAAZE00000003	exon	42250953	42251461	-
GWHAAZE00000003	CDS	42251774	42251930	-
GWHAAZE00000003	CDS	42251513	42251722	-
GWHAAZE00000003	CDS	42250953	42251461	-

Transcript Sequence
>GWHTAAZE011106 ATGAAGGGGGACGTCTCCGCAGAGATCAACCTGCTAAAGCAGATCAACCACTCCAACATAATCAGGCTTTCTGGTTTCTGTTTGCACCAAGACAACACTTACCTTGTTTACGAGTATGCCCACAGAGGTTCCCTCGACGATTGCCTGATACACCATACTACAAAAACAACATTGAGCTGGAAGCAGAGGGTTCAGATTGCATATGATGTAGCTGATGCCTTGAATTACCTGCACAACTACAGCAACCCACCTTACATCCATAAGAACTTAAACAGCAGCAATGTCCTTTTAGACAGTAACTTCAGGGCCAAGATCTCCAACTTCAGTCTGGCCAGAACTGTGGAGCCGCAGCATACTTCTACCAATATGACGAGGCATGTGGTTGGCACCCATGGCTATATGGCCCCTGAGTACGTCGAGAATGGATTAATTACCCCAAAACTCGACGTCTTTGCATTTGGAGTGGTGATGCTGGAGCTCTTGTCTGGAAGGGAAGCAGTACCCCAACCCAAACACAAAAGCAAAGATGTGTTTGACAAGGACAAGATGGATACCATTAACACTGAAGAAGCTAAGGATGAAAGTAATGGTAGCGAATTATTGCTATATGATGGCATAAATGTGGTGCTGGGAGGAGACAATGTGAGAGAGAAGCTGGGAGGGTTCATCGATCCTTGTCTGAGAGCCAACGAGTACCCACTGGACTTGGCCTACTCCATGGCCCAGTTGGCTAAGAGTTGTGTGGTTCATGATCTCAATTCTCGCCCCACCATGGCTGATGTCTTCACCACCCTCTCTAAGATCATGTCCTCTTCAATGGACTGGGATCCATCTGACGAGTTTGACCACTCCACAGCTCTTAGTCGCGGCAGATAG

Network for GWHGAAZE011094

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	262	3.40E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.883
	SRR3591706	second leaf	9.870
	SRR3591707	mature leaf	10.836
	SRR3591708	Shoot apex	21.092
	SRR3591709	Stem	42.494
	SRR3591710	White floral bud	15.883
	SRR3591711	White flower	36.313
	SRR3591712	Green floral bud	15.551
	SRR3591713	Yellow flower	12.954
SRP173429	SRR8316895	Juvenile bud stage	43.656
	SRR8316896	Juvenile bud stage	30.671
	SRR8316897	Juvenile bud stage	38.261
	SRR8316894	Third green stage	14.140
	SRR8316900	Third green stage	16.868
	SRR8316901	Third green stage	24.318
	SRR8316898	Complete white stage	1.242
	SRR8316899	Complete white stage	26.507
	SRR8316903	Complete white stage	3.803
	SRR8316902	Silver flowering stage	4.533
	SRR8316904	Silver flowering stage	6.351
	SRR8316905	Silver flowering stage	2.652
	SRR8316906	Gold flowering stage	14.654
	SRR8316907	Gold flowering stage	12.076
	SRR8316908	Gold flowering stage	18.691
SRP132670	SRR6706286	Control	11.656
	SRR6706287	Light intensity 50%	11.452
	SRR6706288	Light intensity 20%	10.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.462
	CNS0095593	Slightly white alabastrum(diploid) 2	42.440
	CNS0095594	Slightly white alabastrum(diploid) 3	38.868
	CNS0095595	Whole white alabastrum(diploid) 2	24.264
	CNS0095596	Whole white alabastrum(diploid) 3	6.464
	CNS0095597	Whole white alabastrum(diploid) 4	16.969
	CNS0095598	Silvery flower (diploied) 1	73.543
	CNS0095599	Silvery flower (diploied) 2	47.325
	CNS0095600	Silvery flower (diploied) 3	24.095
	CNS0095601	Golden flower (diploid) 1	65.991
	CNS0095602	Golden flower (diploid) 2	43.414
	CNS0095603	Golden flower (diploid) 3	42.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.561
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.828
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.501
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.737
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.920
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.901
	CNS0095610	Silvery flower (tetraploid) 1	11.453
	CNS0095611	Silvery flower (tetraploid) 2	7.924
	CNS0095612	Silvery flower (tetraploid) 3	12.540
	CNS0095613	Golden flower (tetraploid) 1	8.113
	CNS0095614	Golden flower (tetraploid) 2	12.736
	CNS0095615	Golden flower (tetraploid) 3	4.283
CRA001975	CRR073297	Stem 1	29.195
	CRR073298	Stem 2	28.027
	CRR073299	Stem 3	30.986
	CRR073300	Leaf 1	31.385
	CRR073301	Leaf 2	45.263
	CRR073302	Leaf 3	27.017
	CRR073303	Juvenile bud 1	33.099
	CRR073304	Juvenile bud 2	28.171
	CRR073305	Juvenile bud 3	67.983
	CRR073306	Third green 1	11.467
	CRR073307	Third green 2	6.322
	CRR073308	Third green 3	10.433
	CRR073309	Second white 1	11.680
	CRR073310	Second white 2	9.158
	CRR073311	Second white 3	10.890
	CRR073312	Silver flowering 1	25.653
	CRR073313	Silver flowering 2	31.356
	CRR073314	Silver flowering 3	14.092
	CRR073315	Gold flowering 1	30.275
	CRR073316	Gold flowering 2	33.760
	CRR073317	Gold flowering 3	48.950
	CRR073318	Tawny withering 1	21.172
	CRR073319	Tawny withering 2	35.333
	CRR073320	Tawny withering 3	18.739