Gene detail

Detail information of GWHGAAZE011071

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007034371.1	Lectin-domain containing receptor kinase A4.3 [Theobroma cacao]
Swissprot	tr\|O48837\|LRKS2_ARATH	Receptor like protein kinase S.2
trEMBL	tr\|A0A061ELQ1\|A0A061ELQ1_THECC	Lectin-domain containing receptor kinase A4.3 {ECO:0000313\|EMBL:EOY05297.1}
TAIR10	AT2G32800.1	protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	41379538	41382036	+
GWHAAZE00000003	mRNA	41379538	41382036	+
GWHAAZE00000003	exon	41379538	41382036	+
GWHAAZE00000003	CDS	41379538	41382036	+

Transcript Sequence
>GWHTAAZE011083 ATGCAGCTAAACCGCCTCTGCTTCATTCTACCGGCAAAGTTTGAGGATGCCATGCCGGTTGACCATACCCAAGTGAACAAACCAACAACAAAACCGACACATCACCGGAACTGCGGCACCCAAGTTCTTGATCTCCTCTGCCGCACGCTCCACCGGTTCATCGACGTGAAATGGCCAAGTTTTCGCCAACAGGACGGGCCGAGAACACAACCAGTTACTGTTTTTCACGATGCTGATGGAGTACAACTTTGCGAAAAGCTCGGGGGTGCTAATCCAAGGACATTTAGCTATGCGGAGCTCTACATAGGCTCTAAAGGTTTTGGCAAAGACGAAATCCTCGGAAGTGGAGGATTCGGGAGGGTTTACAGAGCCATTTTACCGAGCGATGGAACGGTGGTGGCAGTGAAATGCTTGGCAGAGAGAGGGGAGCAGTTCGAGAAGACTTTCGCAGCAGAGTTGGTGGCGGTGGCTCATCTCCGCCACCGGAATCTCGTCCTCCTCCGAGGATGGTGCGTTCACCAAGACCAATTACTTCTTGTCTACGACTACATGCCCAATCGGAGCCTTGACCGGATTCTTTTTAAACGGATGGACAAAACGGGCTCAACAATGACACTTAGTTGGGAACGGAGAAGGAACATAGTTAATGGACTTGCAGCAGCTCTGGTTTATCTCCATGAACAGTTGGAGACTCAGATTATACACCGAGACGTAAAGACAAGCAATGTGATGCTTGACTCAAATTACAACGCAAGGCTTGGTGACTTTGGCTTGGCAAGGTTGCTTGAGCACAATCTCGATGCGTACCAAGTGAGAACGTCGTCGGTCAAGAATTGCCAGTTCCGGTTAGCCGAGACGACAACAATCGGTGGAACAATTGGCTACTTGCCACCCGAGAGCTTCCAAAGATTAAGTATTCCGACTGCAAAATCCGATGTTTTTAGTTTTGGCATTGTTGTGTTGGAGATTGTGTCGGGTCGGCGAGCAGTGGACCTAACATACCAAGATGATCAGATCATTTTGCTTGATTGGACCCGAAGACTTGCGGACGAGAGGGACTTGTCAAAAGTAAGGGATAGTCGGCTAAAGAGTGGGTCTAATGATATGGACCGATTGGTTCATCTCGGGCTCCTATGTACCCTTCACGACCCGCAATCAAGGCCTAACATGAAATGGGTAGTGGAAACTCTCTCCGGTGAACTTTCAGGCGAACTGCCAGTGCTTCCATCGTTCAAGCTCCACCGTTTTTATATTTCTTTATCTTCCCCCTCAAGAAGTAATAGTGGCAACACAACCACCATCATGAGCTTATCCACCGCCGGAAACTCCGCCACAACAGCTGCATACAATTCGTCGATATTTTTCACAGCCACCGGAGAAACCATATACACGACAGCTGAATACGGAGAGAGTGATATAAGCTCCTCAAATAAAAGCCACCTCCGAGCAAACAGAACCGATGGACCAAACCCTTTCCCTATAATCGAAACTCCTCGAGAAATAACCTTCAAGGAAATCATTTCGGCTACAAATAATTTCTCAGATTCTCAGAGGGTAGCAGAGCTAGACTTTGGAACAGCCTACCATGGGTTTCTCGAGAACGGTCACCATGTCTTGGTGAAGAGGCTAGGCATGAAGACGTGCCCCGCATTGCGGGCTCGCTTCTCAAACGAACTCCTCAACTTGGGCCGGCTTCGCCACCGGAACCTTGTACAACTTTGTGGGTGGTGCACAGAACAAGGTGAGATGCTTGTTATCTATGATTACTCGGCAAATTGCCTTCTAAGTCATCTCCTCTTCCATCACGATTATCGAAGCAAGCATTCAATCCTAAAATGGCGCCAAAGGTACAACATAGTGAAATCACTTGCTTCTGCGATTCTTTATCTCCATGAAGAATGGGACGAGCAAGTGATTCACAGGAATATTACCTCTTCGGCTATCATTCTTGATCCGGACATGAACCCAAGGCTCACTTGCTTTGCCCTCGCCAAGTTCTTGACGAGGAATGAGCACAGCCATCACGTAGTAGTTGACAACAAAAGCTCCATTCGTGGGATTTTTGGGTACATGTCACCTGAGTGTATGGACTCTGGCGATGCAACGTCAATGGCCGATGTTTATAGCTTTGGCGTAGTGGTACTTGAGGTAGTTAGTGGACAGATGGCGGTTGACTTTCGGCTACCAGAGGTACTACTGGTAAAGAGAGTCCATGAATACGAGGTGCGTAAGAGAAAATATGAAGAATTGGCAGATTGGAAGCTAGACGGAGAGTATAACCGTGAGGAACTAGCGAGGCTGGTGAAACTAGGAGTGGCATGCACGCGGTCAAACCCAGAGTTAAGACCAGGTATGAGGCAGATTGTAAGTATACTAGACGGGTACGATAGATGCTTCACTGAAGAAGGGCAAAAGAAGGAGAGAACCGAAGAATGGAAACAAAGAAACGATTCTTCTTTGTCACTAATTAAGAGGATTCAAGCCCTAGGAATACAATGA

Network for GWHGAAZE011071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	109	393	6.10E-42
PF07714.18	PK_Tyr_Ser-Thr	519	792	1.70E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.359
	SRR3591706	second leaf	0.333
	SRR3591707	mature leaf	0.386
	SRR3591708	Shoot apex	1.042
	SRR3591709	Stem	1.778
	SRR3591710	White floral bud	0.512
	SRR3591711	White flower	0.491
	SRR3591712	Green floral bud	0.468
	SRR3591713	Yellow flower	1.308
SRP173429	SRR8316895	Juvenile bud stage	0.193
	SRR8316896	Juvenile bud stage	0.875
	SRR8316897	Juvenile bud stage	0.233
	SRR8316894	Third green stage	0.099
	SRR8316900	Third green stage	0.140
	SRR8316901	Third green stage	0.177
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.208
	SRR8316903	Complete white stage	0.111
	SRR8316902	Silver flowering stage	0.029
	SRR8316904	Silver flowering stage	0.242
	SRR8316905	Silver flowering stage	0.076
	SRR8316906	Gold flowering stage	0.129
	SRR8316907	Gold flowering stage	0.209
	SRR8316908	Gold flowering stage	0.261
SRP132670	SRR6706286	Control	0.192
	SRR6706287	Light intensity 50%	0.240
	SRR6706288	Light intensity 20%	0.136
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.250
	CNS0095593	Slightly white alabastrum(diploid) 2	0.236
	CNS0095594	Slightly white alabastrum(diploid) 3	0.207
	CNS0095595	Whole white alabastrum(diploid) 2	0.195
	CNS0095596	Whole white alabastrum(diploid) 3	0.079
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.178
	CNS0095599	Silvery flower (diploied) 2	0.564
	CNS0095600	Silvery flower (diploied) 3	0.334
	CNS0095601	Golden flower (diploid) 1	0.846
	CNS0095602	Golden flower (diploid) 2	0.275
	CNS0095603	Golden flower (diploid) 3	0.369
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.297
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.193
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.037
	CNS0095610	Silvery flower (tetraploid) 1	0.112
	CNS0095611	Silvery flower (tetraploid) 2	0.024
	CNS0095612	Silvery flower (tetraploid) 3	0.169
	CNS0095613	Golden flower (tetraploid) 1	0.127
	CNS0095614	Golden flower (tetraploid) 2	0.182
	CNS0095615	Golden flower (tetraploid) 3	0.157
CRA001975	CRR073297	Stem 1	0.635
	CRR073298	Stem 2	0.494
	CRR073299	Stem 3	0.860
	CRR073300	Leaf 1	0.229
	CRR073301	Leaf 2	0.598
	CRR073302	Leaf 3	0.034
	CRR073303	Juvenile bud 1	0.032
	CRR073304	Juvenile bud 2	0.055
	CRR073305	Juvenile bud 3	0.027
	CRR073306	Third green 1	0.052
	CRR073307	Third green 2	0.018
	CRR073308	Third green 3	0.174
	CRR073309	Second white 1	0.130
	CRR073310	Second white 2	0.362
	CRR073311	Second white 3	0.404
	CRR073312	Silver flowering 1	0.944
	CRR073313	Silver flowering 2	0.542
	CRR073314	Silver flowering 3	0.253
	CRR073315	Gold flowering 1	0.218
	CRR073316	Gold flowering 2	0.348
	CRR073317	Gold flowering 3	0.142
	CRR073318	Tawny withering 1	7.222
	CRR073319	Tawny withering 2	2.759
	CRR073320	Tawny withering 3	4.596