Gene detail

Detail information of GWHGAAZE010989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN79409.1	0	hypothetical protein VITISV_038451 [Vitis vinifera]
Swissprot	tr\|Q9LYN8\|EXS_ARATH	0	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|F6I4A1\|F6I4A1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61816.1}
TAIR10	AT5G07280.1	1E-178	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	37675765	37679509	+
GWHAAZE00000003	mRNA	37675765	37679509	+
GWHAAZE00000003	exon	37675765	37676380	+
GWHAAZE00000003	exon	37677570	37679509	+
GWHAAZE00000003	CDS	37675765	37676380	+
GWHAAZE00000003	CDS	37677570	37679509	+

Transcript Sequence
>GWHTAAZE011001 ATGCACTTACCCTCCGATGGTGCCATCTATTTTGGTGACATCGAGTCGTTAATTACTCTCAGAAACTCCATTGTCCAAAAACGAGACGTTATTCCAACTTGGTTTAATACAAGCATTGCTCCATGCAACTGGACCGGCATAATCTGTGAAGGACCAATAGTGTCACAAATCGATTTATCTTGTTCATTTTTACCCCTGAGTATTCCCTTTCCCACCTCCCTCAGAAAATTCAGATCTCTAAAGTGCCTAAACCTAAGCCATTGTGCCCTTACCGGCACTCTACCTCCCTCTCTTTGGAGTCTCGAGAATTTGGAGACACTGGACCTGAGTGGCAATAGATTGGTCGGGGTGCTCCCTCTTTCTCTCTCTAACCTCAAAAATCTCCGAGAACTTGTGCTCGATGACAATAGTTTCACGGGAAGTATACCATCCACAATAGGTCTCCTCAAAGAACTAATTGAATTCTCGGTCCATGCAAACTCATTCTCAGGCACTCTTCCTGAGGAGATAGGGAATTTACGGAAACTACAGTCCCTGGACCTCAGTGTAAATTTCTTCTCAGGGGGCCTTCCTTCGAGCTTAGGCAATCTTAGCAGGCTATTGTACTTTGATGCTAAGGTGCCTTTACCAGATTCTGAGTTCATCCAGCACTACGGTATGCTTGATCTGTCGAATAACGAGTTTTCTGGGCTCATTCCCACATCAATCGAGCAGTGTATCATCGTAACGGAGCTGCTATTGAATGGAAACAAACTCGATGGGACCGTTCCTTATCAGATTTCTGGGCTGGCTAATTTAACTTTGCTTGATCTGTCTTTCAATCATTTGAAGGGGCCAATACCACCTCGTTTCTTCTCAATGAGGAACCTTCAAGGACTTGTACTTTCGCATAACTTGCTAAGCGGCTCGGTCCCGGATAATCTTGGTTCGCTGCTGCCTAGCTTAGTCAAGCTTGATCTGTCGAGTAACCGGTTCACCGGTCCATTGCCTTCATCCGCGTTCAGCATTAAGAGTCTGACCTACCTCAACGTTAGTATGAATTCATTCTCAGGTCCTCTCTCTTTTGATCATGGGGTCACCGGCTCTCTTTTAGTCCTAAATGCCAGCAACAACCAATTCTCGGGTACCCTTGGTGACTCTCTCTCTAACCTCACTTCTCTCTCATCACTCGATATTCACAACAACACAATCACCGGCCACTTGCCTTCATCCCTCTCGAATCTCGCAGCCTTGACCTACCTCGACTTCTCGAACAACTATTTCCAGGATCTCTTCCCTTGCAATATTTGTGACATATCAGGCCTAACATTTGTCAATTTCTCTGGCAATAGGTTCGCTGGTCACGTGCCTGAAACTTGCACGGAGGCTTTATCTTGCATGCCTTGTCAATCCGTTTCCCCTTCTAAAGACGGGTACCCGCCTAGGCCAGTTCTAACCCACGCTTCTGTTCTGGTAATTGCACTTGGTGCCACATTCATCTCCTTGGTTCTGCTCATTGTTCTTCTCAAATGGAGGATGCTTAAACAAGAAGCTGTTATTCTTGACCAGGGGAAGGGTAAGATTGTGACAGCAATTGAGCCCGAGTTCACCGATGGGCTTTTGAGAAAGAAGCCAAAGGAGCCACTTAGCATTAATATCGCAACTTTTGAGCACTCTCTGTTACGGATAAACCCTGGGGACATTTTATCGGCGACCGAAAATTTCAGCAAGACCTACATTATCGGTGACGGTGGATTTGGTACGGTTTATAGAGCTTCATTGCCAGAAGGAGGAACTTTTGCTGTCAAAAGGCTCAACGGCGGTCATTTGCACGGTGACCGAGAATTCTTGGCTGAAATGGAGACCATAGGGAAGGTTAAGCATGAAAACCTCGTCCCATTACTTGGTTACTGCGTATTTGGTGACGAGAGGTCCTTGATATACGAATACATGGCGAATGGAAGCCTTGACGTGTGGTTGAGGAACCGGGCAGACGCAGTTGAGGCACTCAACTGGCCCACCAGGTTCAAGATTTGCCTTGGTTCGGCTCGAGGGTTGGCCTTTCTGCACCACGGGTTCGTGCCCCACATCATTCACCGGGACATAAAGGCGAGCAACATTTTGCTCGACGGGAAATTCGAGGCACGGGTTTCAGATTTTGGGCTGGCTCGGATCATTAGTGCGTGTGAGACCCATGTCAGCACTGTGCTAGCGGGTACCTTTGGGTATATACCACCCGAGTACGGTCAGACCATGGTAGCTACAACTAAGGGTGACGTATATAGCTTTGGAGTGGTGATGCTGGAGCTAGTTACCGGCAAGGCACCGACTGGTCAGGCCGATGTTGAGGGTGGGAACCTTGTGGGTTGGGTCAGGTGGATGATCCAAACCGGGAGGGAACCTGAGGTACTTGACCCGTATTTCTCTACCTCCGCCATGTGGAATGATCAGATGCTGCAAGTTCTTGGAATCGCACGCTCCTGTACACATGATGACCCGTGGAAGCGGCCCACAATGCTGGTGGTTGTGAAGATGTTGAAGGAGATTAAGGTGAAAACTGGAACTTGTGGTGATTAA

Network for GWHGAAZE010989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	13	49	3.90E-07
PF00560.34	LRR_1	79	101	1.3
PF00560.34	LRR_1	103	125	0.11
PF00560.34	LRR_1	175	197	0.24
PF13855.7	LRR_8	221	276	5.40E-07
PF07714.18	PK_Tyr_Ser-Thr	573	838	9.90E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.090
	SRR3591706	second leaf	0.164
	SRR3591707	mature leaf	0.158
	SRR3591708	Shoot apex	0.430
	SRR3591709	Stem	0.075
	SRR3591710	White floral bud	1.049
	SRR3591711	White flower	0.639
	SRR3591712	Green floral bud	2.428
	SRR3591713	Yellow flower	0.246
SRP173429	SRR8316895	Juvenile bud stage	2.225
	SRR8316896	Juvenile bud stage	2.479
	SRR8316897	Juvenile bud stage	1.442
	SRR8316894	Third green stage	1.321
	SRR8316900	Third green stage	3.302
	SRR8316901	Third green stage	2.800
	SRR8316898	Complete white stage	0.337
	SRR8316899	Complete white stage	1.014
	SRR8316903	Complete white stage	1.101
	SRR8316902	Silver flowering stage	0.698
	SRR8316904	Silver flowering stage	1.070
	SRR8316905	Silver flowering stage	1.134
	SRR8316906	Gold flowering stage	2.295
	SRR8316907	Gold flowering stage	2.846
	SRR8316908	Gold flowering stage	1.828
SRP132670	SRR6706286	Control	4.027
	SRR6706287	Light intensity 50%	4.181
	SRR6706288	Light intensity 20%	4.610
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.564
	CNS0095593	Slightly white alabastrum(diploid) 2	1.277
	CNS0095594	Slightly white alabastrum(diploid) 3	1.652
	CNS0095595	Whole white alabastrum(diploid) 2	1.219
	CNS0095596	Whole white alabastrum(diploid) 3	1.029
	CNS0095597	Whole white alabastrum(diploid) 4	1.054
	CNS0095598	Silvery flower (diploied) 1	0.962
	CNS0095599	Silvery flower (diploied) 2	0.909
	CNS0095600	Silvery flower (diploied) 3	2.755
	CNS0095601	Golden flower (diploid) 1	0.863
	CNS0095602	Golden flower (diploid) 2	1.169
	CNS0095603	Golden flower (diploid) 3	1.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.880
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.306
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.648
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.162
	CNS0095610	Silvery flower (tetraploid) 1	1.360
	CNS0095611	Silvery flower (tetraploid) 2	2.729
	CNS0095612	Silvery flower (tetraploid) 3	3.786
	CNS0095613	Golden flower (tetraploid) 1	0.466
	CNS0095614	Golden flower (tetraploid) 2	0.864
	CNS0095615	Golden flower (tetraploid) 3	1.032
CRA001975	CRR073297	Stem 1	3.479
	CRR073298	Stem 2	2.975
	CRR073299	Stem 3	5.817
	CRR073300	Leaf 1	2.560
	CRR073301	Leaf 2	2.367
	CRR073302	Leaf 3	2.596
	CRR073303	Juvenile bud 1	1.351
	CRR073304	Juvenile bud 2	2.022
	CRR073305	Juvenile bud 3	1.755
	CRR073306	Third green 1	2.898
	CRR073307	Third green 2	2.079
	CRR073308	Third green 3	2.089
	CRR073309	Second white 1	3.153
	CRR073310	Second white 2	4.686
	CRR073311	Second white 3	4.929
	CRR073312	Silver flowering 1	3.831
	CRR073313	Silver flowering 2	3.259
	CRR073314	Silver flowering 3	2.397
	CRR073315	Gold flowering 1	0.473
	CRR073316	Gold flowering 2	0.352
	CRR073317	Gold flowering 3	0.538
	CRR073318	Tawny withering 1	0.086
	CRR073319	Tawny withering 2	0.352
	CRR073320	Tawny withering 3	0.000