Detail information of GWHGAAZE010986


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073808.13.12699E-31PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Sesamum indicum]
Swissprottr|Q9SAC0|ZCIS_ARATH1E-2515-cis-zeta-carotene isomerase, chloroplastic (Precursor)
trEMBLtr|W9SFU8|W9SFU8_9ROSA6E-31Uncharacterized protein {ECO:0000313|EMBL:EXC73152.1}
TAIR10AT1G10830.21E-2215-cis-zeta-carotene isomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene3762607637627680-
GWHAAZE00000003mRNA3762607637627680-
GWHAAZE00000003exon3762607637626159-
GWHAAZE00000003exon3762726737627680-
GWHAAZE00000003CDS3762726737627680-
GWHAAZE00000003CDS3762607637626159-
Transcript Sequence

Network for GWHGAAZE010986

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15744Z-ISO Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.740
SRR3591706second leaf12.318
SRR3591707mature leaf10.817
SRR3591708Shoot apex9.192
SRR3591709Stem4.744
SRR3591710White floral bud35.179
SRR3591711White flower28.026
SRR3591712Green floral bud8.610
SRR3591713Yellow flower21.190
SRP173429 SRR8316895Juvenile bud stage 5.938
SRR8316896Juvenile bud stage 6.313
SRR8316897Juvenile bud stage 2.358
SRR8316894Third green stage 3.339
SRR8316900Third green stage 15.495
SRR8316901Third green stage 12.505
SRR8316898Complete white stage 20.975
SRR8316899Complete white stage 17.216
SRR8316903Complete white stage 34.752
SRR8316902Silver flowering stage36.094
SRR8316904Silver flowering stage46.082
SRR8316905Silver flowering stage34.571
SRR8316906Gold flowering stage 77.441
SRR8316907Gold flowering stage 71.608
SRR8316908Gold flowering stage 65.842
SRP132670SRR6706286Control9.180
SRR6706287Light intensity 50%10.791
SRR6706288Light intensity 20%11.387
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.950
CNS0095593Slightly white alabastrum(diploid) 23.929
CNS0095594Slightly white alabastrum(diploid) 31.746
CNS0095595Whole white alabastrum(diploid) 23.497
CNS0095596Whole white alabastrum(diploid) 32.838
CNS0095597Whole white alabastrum(diploid) 42.849
CNS0095598Silvery flower (diploied) 14.796
CNS0095599Silvery flower (diploied) 28.471
CNS0095600Silvery flower (diploied) 345.750
CNS0095601Golden flower (diploid) 17.806
CNS0095602Golden flower (diploid) 223.909
CNS0095603Golden flower (diploid) 327.259
CNS0095604Slightly white alabastrum(tetraploid) 12.175
CNS0095605Slightly white alabastrum(tetraploid) 21.185
CNS0095606Slightly white alabastrum(tetraploid) 36.702
CNS0095607Whole white alabastrum(tetraploid) 11.234
CNS0095608Whole white alabastrum(tetraploid) 21.865
CNS0095609Whole white alabastrum(tetraploid) 34.391
CNS0095610Silvery flower (tetraploid) 118.168
CNS0095611Silvery flower (tetraploid) 221.086
CNS0095612Silvery flower (tetraploid) 329.905
CNS0095613Golden flower (tetraploid) 17.532
CNS0095614Golden flower (tetraploid) 216.184
CNS0095615Golden flower (tetraploid) 313.006
CRA001975CRR073297Stem 17.400
CRR073298Stem 28.532
CRR073299Stem 310.409
CRR073300Leaf 110.066
CRR073301Leaf 212.643
CRR073302Leaf 314.694
CRR073303Juvenile bud 118.411
CRR073304Juvenile bud 222.801
CRR073305Juvenile bud 317.152
CRR073306Third green 1117.554
CRR073307Third green 283.374
CRR073308Third green 372.871
CRR073309Second white 1119.573
CRR073310Second white 293.658
CRR073311Second white 3118.137
CRR073312Silver flowering 191.076
CRR073313Silver flowering 282.064
CRR073314Silver flowering 377.962
CRR073315Gold flowering 113.145
CRR073316Gold flowering 216.882
CRR073317Gold flowering 316.799
CRR073318Tawny withering 15.000
CRR073319Tawny withering 23.580
CRR073320Tawny withering 34.966