Gene detail

Detail information of GWHGAAZE010945

Functional Annotation

Database	Orthologs	Annotation
Nr	CAN79409.1	hypothetical protein VITISV_038451 [Vitis vinifera]
Swissprot	tr\|Q9LYN8\|EXS_ARATH	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|A5BX07\|A5BX07_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79409.1}
TAIR10	AT5G07280.1	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35799529	35803344	+
GWHAAZE00000003	mRNA	35799529	35803344	+
GWHAAZE00000003	exon	35799529	35803344	+
GWHAAZE00000003	CDS	35799529	35803344	+

Transcript Sequence
>GWHTAAZE010957 ATGTCAAAGCCAACTTCAACTGCCCCCTCTGCTCACTTTCTAGTCCTAATCTGCCTGCTGTTTATGCACTTACCCTCCGATGGTACCAGCTATTTTGGTGACATCGAGTCGTTAATTACTCTCAGAAACTCCATTGTCCAAAAACGAGATGTTATTCCAACTTGGTTTAATACAAGCATTGCTCCATGCAACTGGACCGGCATAATCTGTGAAGGACCAATAGTGTCACAAATCGATTTATCTTGTTCATTTTTACCCCTGAGTATTCCCTTTCCCACCTCCCTCAGAAAATTCAGATCTCTAAAGTGCCTAAACCTAAGCCATTGTGCCCTTACCGGCACTCTACCTCCCTCTCTTTGGAGTCTCGAGAATTTGGAGACACTGGACCTGAGTGGCAATAGATTGGTCGGGGTTCTCCCTCTTTCTCTCTCTAACCTCAAAAATCTCCGAGAACTTGTGCTCGATGACAATAGTTTCACTGGAAGTATACCATCCACAATAGGTCTCCTCAAAGAACTAATTGAATTCTCGGTCCATGCAAACTCATTCTCAGGCACTCTTCCTGAGGAGATAGGGAATTTACGGAAACTACAGTCCCTGGACCTCAGTGTAAATTTCTTCTCAGGGGGCCTTCCTTCGAGCTTAGGCAATCTTACCAGGCTATTGTACTTTGATGCTAGTCAGAACAGATTTACCGGATCAATATTTCCCAAAATCGGAAACTTGGCAATGCTTAATACACTTGATGTCTCGTTTAACCCCCTGGACGGTCCTATACCGATAACAATCGGCAATCTGAGAGGTCTACGGGTACTAAATCTTCAGAGTTGTGGGATCACTGGAAAGATCCCGGATGAAATCTCAGAGTTGACTGCGTTGACTTCCTTGAATATTGGGCAGAATGATTTTGATGGGGAACTGTCTTCGAGCTTTGGTAAGCTCGAAAATCTAGTTTACTTTCTTGCTACAAGTGCAGGACTGAGTGGAACAATTCCCGGAACACTGGGAAACTGCAAAAAACTCTGTATTCTGAATTTGTCCTTCAACTCGTTATCAGGTCCACTTCCCGAAGGTCTTAAAGGGCTGGAATCGATCAATTCTCTCGTTCTTGATTCGAATCGCCTCACTGGTGAGGTACCCAAATGGCTATCAGAATGGAAACAGGTAGAGTCAGTAATGTTGGCAAAGAATCACTTTGAAGGAACTGTACCCCCCCTTGATATGCCTTCACTGACCTTTCTTGATATCAGTAGCAATATGCTTTCTGGTGAATTAAAGGCTGAGATTTGCCGTGCAAAATCATTGGCCATCTTAGTGCTATCTGATAATAACTTCACTGGTACCATAAACAGCACTTTCAAGAATTGCTTGAACCTCTCTGATTTGGTTTTGTCTGGTAACCGTCTCTTTGGTGAAATACCTGCTTATCTAGGGGAGCTTCAACTCATCACTTTGGAACTGTCGAAAAACCAATTCTCTGGGAAGTTTCCTGACCGGCTCTGGGATTCAAAGACCTTAATGGAGGTTTCACTTGGCAACAATTTGCTTGAGGGTTCAATTTCACCGGCAGTTGCAAAAACTTTGACACTGCAGAGGATACAACTGGATAATAATCTTTTTGAAGGGGAGATCCCAAAGTCCATTGGCGAACTGAAAAATCTTACTAATCTTTCTCTACATGGTAACAAGTTGACTGGTGAGATTCCATTGGAGCTTTTCGAGTGTACGAATTTGGTCTCTTTGGACCTAGGTGGAAACAGGCTTTCGGGTTCCATTCCAAAAGCAATATCTCAGTTGGTATTGCTCGATAACCTGGTACTATCCAACAACAACCTCTCTGGTTCGATACCCGAGGAGATCTGTTCCGGGTTTCAAAAGGTGCCTTTACCAGATTCTGAGTTCATCCAGCACTACGGTATGCTTGATCTGTCGAATAACGAGTTTTCTGGGCTCATTCCCACATCAATCGAGCAGTGTATCATCGTAACGGAGCTACTATTGAATGGAAACAAACTCGATGGGACGGTTCCTTATCAGATTTCTGGGCTGGCTAATTTAACTTTGCTTGATCTGTCTTTCAATCATTTGAAGGGGCCGATACCACCTCGTTTCTTCTCGATGAGGAACCTTCAAGGACTTGTACTTTCGCATAACTTGCTAAGCGGCTCGGTCCTGGATAATCTTGGTTCGCTGCTGCCTAGCTTAGTCAAGCTTGATCTGTCGAGTAACTGGTTCACCGGTCCATTGCCTTCATCTGCATTCAGCATTAAGAGTCTGACCTACCTCAACGTTAGTATGAATTCATTCTCAGGTCCTCTCTCTTTTGATCATGGGGTCACCGGCTCTCTTTTAGTCCTAAATGCCAGCAACAACCAATTCTCGGGTACCCTTGGTGACTCTCTCTCTAACCTCACTTCTCTCTCATCACTCGATATTCACAACAACACAATCACCGGCCATTTGCCTTCGTCCCTCTCGAATCTCGCAGCCTTGACCTACCTCGACTTCTCAAACAACTATTTCCAGGATCTCTTCCCTTGCAATATTTGTGACATATCAGGCCTAACATTTGTCAATTTCTCTGGCAATAGGTTCACTGGTCACGTGCCTGAAACTTGCACGGAGGCTTTACCTTGCATGCCTTGTCAATCCGTTTCCCCTTCTAAAGACGGGTACCCGCCTAGGCCAGTTCTAACCCACGCTTCTGTTCTGGTAATTGCACTTGGTGCCACATTCATCTCCTTGGTTCTGCTCATTGTTCTTCTCAAATGGAGGATGCTTAAACAAGAAGCTGTTATTCTTGACCAGGGGAAGGGTAAGATTGTGACAGCAATCGAGCCCGAGTTCACCGATGGGCTTTTGAGAAAGAAGCCGAAGGAGCCACTTAGCATTAATATCGCAACTTTTGAGCACTCTCTGTTACGGATAAACCCTGGGGACATTTTATCGGCGACCGAAAATTTCAGCAAGACCTACATTATCGGTGACGGTGGATTTGGTACGGTTTATAGAGCTTCATTGCCAGAAGGAGGAACTTTTGCTGTCAAAAGGCTCAACGGCGGTCATTTGCACGGTGACCGAGAATTCTTGGCTGAAATGGAGACCATAGGGAAGGTTAAGCATGAAAACCTCGTCCCATTACTTGGTTACTGTGTATTTGGTGATGAGAGGTCCTTGATATACGAATACATGGCGAATGGAAGCCTTGACGTGTGGTTGAGGAACCGGGCAGACGCAGTTGAGGCACTCGACTGGCCCACCAGGTTCAAGATTTGCCTTGGTTCGGCTCGAGGGTTGGCCTTTCTGCACCACGGGTTCGTGCCCCACATCATTCACCGGGACATAAAGGCGAGCAACATTTTGCTCGACGGGAAATTCGAGGCACGGGTTTCAGATTTTGGGCTGGCTCGGATCATTAGTGCGTGTGAGACCCATGTCAGCACTGTGCTAGCAGGTACCTTTGGGTATATACCACCCGAGTACGGTCAGACCATGGTAGCTACAACTAAGGGTGACGTATATAGCTTTGGAGTGGTGATGCTGGAGCTGGTTACCGGCAAGGCACCGACTGGTCAGGCCGATGTTGAGGGTGGGAACCTTGTGGGTTGGGTCAGGTGGATGATCCAAACCGGGAGGGAACCTGAGGTACTTGACCCGTATTTCTCTACCTCCGCCATGTGGAATGATCAGATGCTGCAAGTTCTTGGGATCGCACGCTCCTGTACACATGATGACCCGTGGAAGCGGCCCACAATGCTGGAGGTTGTGAAGATGTTGAAGGAGATTAAGGTGAAAACTGGAACTTGTGGTGATTAA

Network for GWHGAAZE010945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	70	6.10E-07
PF13855.7	LRR_8	99	158	4.80E-07
PF00560.34	LRR_1	196	218	0.38
PF13855.7	LRR_8	641	696	8.70E-07
PF07714.18	PK_Tyr_Ser-Thr	993	1259	7.10E-41

Protein Sequence

>GWHPAAZE010951
MSKPTSTAPSAHFLVLICLLFMHLPSDGTSYFGDIESLITLRNSIVQKRDVIPTWFNTSIAPCNWTGIICEGPIVSQIDLSCSFLPLSIPFPTSLRKFRSLKCLNLSHCALTGTLPPSLWSLENLETLDLSGNRLVGVLPLSLSNLKNLRELVLDDNSFTGSIPSTIGLLKELIEFSVHANSFSGTLPEEIGNLRKLQSLDLSVNFFSGGLPSSLGNLTRLLYFDASQNRFTGSIFPKIGNLAMLNTLDVSFNPLDGPIPITIGNLRGLRVLNLQSCGITGKIPDEISELTALTSLNIGQNDFDGELSSSFGKLENLVYFLATSAGLSGTIPGTLGNCKKLCILNLSFNSLSGPLPEGLKGLESINSLVLDSNRLTGEVPKWLSEWKQVESVMLAKNHFEGTVPPLDMPSLTFLDISSNMLSGELKAEICRAKSLAILVLSDNNFTGTINSTFKNCLNLSDLVLSGNRLFGEIPAYLGELQLITLELSKNQFSGKFPDRLWDSKTLMEVSLGNNLLEGSISPAVAKTLTLQRIQLDNNLFEGEIPKSIGELKNLTNLSLHGNKLTGEIPLELFECTNLVSLDLGGNRLSGSIPKAISQLVLLDNLVLSNNNLSGSIPEEICSGFQKVPLPDSEFIQHYGMLDLSNNEFSGLIPTSIEQCIIVTELLLNGNKLDGTVPYQISGLANLTLLDLSFNHLKGPIPPRFFSMRNLQGLVLSHNLLSGSVLDNLGSLLPSLVKLDLSSNWFTGPLPSSAFSIKSLTYLNVSMNSFSGPLSFDHGVTGSLLVLNASNNQFSGTLGDSLSNLTSLSSLDIHNNTITGHLPSSLSNLAALTYLDFSNNYFQDLFPCNICDISGLTFVNFSGNRFTGHVPETCTEALPCMPCQSVSPSKDGYPPRPVLTHASVLVIALGATFISLVLLIVLLKWRMLKQEAVILDQGKGKIVTAIEPEFTDGLLRKKPKEPLSINIATFEHSLLRINPGDILSATENFSKTYIIGDGGFGTVYRASLPEGGTFAVKRLNGGHLHGDREFLAEMETIGKVKHENLVPLLGYCVFGDERSLIYEYMANGSLDVWLRNRADAVEALDWPTRFKICLGSARGLAFLHHGFVPHIIHRDIKASNILLDGKFEARVSDFGLARIISACETHVSTVLAGTFGYIPPEYGQTMVATTKGDVYSFGVVMLELVTGKAPTGQADVEGGNLVGWVRWMIQTGREPEVLDPYFSTSAMWNDQMLQVLGIARSCTHDDPWKRPTMLEVVKMLKEIKVKTGTCGD

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.495
	SRR3591706	second leaf	0.868
	SRR3591707	mature leaf	0.920
	SRR3591708	Shoot apex	2.196
	SRR3591709	Stem	0.138
	SRR3591710	White floral bud	2.113
	SRR3591711	White flower	1.347
	SRR3591712	Green floral bud	4.302
	SRR3591713	Yellow flower	0.803
SRP173429	SRR8316895	Juvenile bud stage	2.116
	SRR8316896	Juvenile bud stage	1.982
	SRR8316897	Juvenile bud stage	2.031
	SRR8316894	Third green stage	0.782
	SRR8316900	Third green stage	2.014
	SRR8316901	Third green stage	1.960
	SRR8316898	Complete white stage	0.156
	SRR8316899	Complete white stage	0.564
	SRR8316903	Complete white stage	0.849
	SRR8316902	Silver flowering stage	0.138
	SRR8316904	Silver flowering stage	0.500
	SRR8316905	Silver flowering stage	0.341
	SRR8316906	Gold flowering stage	0.676
	SRR8316907	Gold flowering stage	0.663
	SRR8316908	Gold flowering stage	4.550
SRP132670	SRR6706286	Control	3.142
	SRR6706287	Light intensity 50%	3.060
	SRR6706288	Light intensity 20%	2.748
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.596
	CNS0095593	Slightly white alabastrum(diploid) 2	0.955
	CNS0095594	Slightly white alabastrum(diploid) 3	1.487
	CNS0095595	Whole white alabastrum(diploid) 2	0.887
	CNS0095596	Whole white alabastrum(diploid) 3	0.831
	CNS0095597	Whole white alabastrum(diploid) 4	1.131
	CNS0095598	Silvery flower (diploied) 1	0.571
	CNS0095599	Silvery flower (diploied) 2	0.421
	CNS0095600	Silvery flower (diploied) 3	0.811
	CNS0095601	Golden flower (diploid) 1	0.696
	CNS0095602	Golden flower (diploid) 2	0.674
	CNS0095603	Golden flower (diploid) 3	0.821
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.400
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.396
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.558
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.493
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.669
	CNS0095610	Silvery flower (tetraploid) 1	0.387
	CNS0095611	Silvery flower (tetraploid) 2	0.539
	CNS0095612	Silvery flower (tetraploid) 3	0.611
	CNS0095613	Golden flower (tetraploid) 1	0.156
	CNS0095614	Golden flower (tetraploid) 2	0.311
	CNS0095615	Golden flower (tetraploid) 3	0.247
CRA001975	CRR073297	Stem 1	3.611
	CRR073298	Stem 2	2.860
	CRR073299	Stem 3	4.410
	CRR073300	Leaf 1	2.064
	CRR073301	Leaf 2	2.029
	CRR073302	Leaf 3	2.041
	CRR073303	Juvenile bud 1	0.908
	CRR073304	Juvenile bud 2	1.396
	CRR073305	Juvenile bud 3	1.498
	CRR073306	Third green 1	0.957
	CRR073307	Third green 2	1.060
	CRR073308	Third green 3	0.654
	CRR073309	Second white 1	0.653
	CRR073310	Second white 2	0.704
	CRR073311	Second white 3	0.842
	CRR073312	Silver flowering 1	0.895
	CRR073313	Silver flowering 2	0.350
	CRR073314	Silver flowering 3	0.289
	CRR073315	Gold flowering 1	0.175
	CRR073316	Gold flowering 2	0.189
	CRR073317	Gold flowering 3	0.010
	CRR073318	Tawny withering 1	0.099
	CRR073319	Tawny withering 2	0.126
	CRR073320	Tawny withering 3	0.123