Detail information of GWHGAAZE010925


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP15104.10unnamed protein product [Coffea canephora]
Swissprottr|Q9LK39|AAE16_ARATH0Probable acyl-activating enzyme 16, chloroplastic (Precursor)
trEMBLtr|A0A068V3M4|A0A068V3M4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_95 {ECO:0000313|EMBL:CDP15104.1}
TAIR10AT3G23790.10AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene3534111335388186-
GWHAAZE00000003mRNA3534111335388186-
GWHAAZE00000003exon3538801335388186-
GWHAAZE00000003exon3538353335383721-
GWHAAZE00000003exon3537294735373061-
GWHAAZE00000003exon3537139935371486-
GWHAAZE00000003exon3537057535370626-
GWHAAZE00000003exon3537045835370483-
GWHAAZE00000003exon3536946135369672-
GWHAAZE00000003exon3536449835364616-
GWHAAZE00000003exon3536168935361838-
GWHAAZE00000003exon3536110735361174-
GWHAAZE00000003exon3536025535360360-
GWHAAZE00000003exon3535965535359813-
GWHAAZE00000003exon3535940335359456-
GWHAAZE00000003exon3535900235359082-
GWHAAZE00000003exon3535156335351700-
GWHAAZE00000003exon3534706035347219-
GWHAAZE00000003exon3534569235345771-
GWHAAZE00000003exon3534540335345548-
GWHAAZE00000003exon3534135135341408-
GWHAAZE00000003exon3534111335341205-
GWHAAZE00000003CDS3538801335388186-
GWHAAZE00000003CDS3538353335383721-
GWHAAZE00000003CDS3537294735373061-
GWHAAZE00000003CDS3537139935371486-
GWHAAZE00000003CDS3537057535370626-
GWHAAZE00000003CDS3537045835370483-
GWHAAZE00000003CDS3536946135369672-
GWHAAZE00000003CDS3536449835364616-
GWHAAZE00000003CDS3536168935361838-
GWHAAZE00000003CDS3536110735361174-
GWHAAZE00000003CDS3536025535360360-
GWHAAZE00000003CDS3535965535359813-
GWHAAZE00000003CDS3535940335359456-
GWHAAZE00000003CDS3535900235359082-
GWHAAZE00000003CDS3535156335351700-
GWHAAZE00000003CDS3534706035347219-
GWHAAZE00000003CDS3534569235345771-
GWHAAZE00000003CDS3534540335345548-
GWHAAZE00000003CDS3534135135341408-
GWHAAZE00000003CDS3534111335341205-
Transcript Sequence

Network for GWHGAAZE010925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding956285.00E-92
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01897ACSL, fadD Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Ferroptosismap04216
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.161
SRR3591706second leaf25.810
SRR3591707mature leaf30.745
SRR3591708Shoot apex28.385
SRR3591709Stem7.731
SRR3591710White floral bud32.099
SRR3591711White flower86.566
SRR3591712Green floral bud29.420
SRR3591713Yellow flower181.529
SRP173429 SRR8316895Juvenile bud stage 17.088
SRR8316896Juvenile bud stage 23.110
SRR8316897Juvenile bud stage 11.461
SRR8316894Third green stage 8.407
SRR8316900Third green stage 28.151
SRR8316901Third green stage 26.887
SRR8316898Complete white stage 11.981
SRR8316899Complete white stage 20.941
SRR8316903Complete white stage 21.852
SRR8316902Silver flowering stage92.798
SRR8316904Silver flowering stage138.567
SRR8316905Silver flowering stage77.827
SRR8316906Gold flowering stage 369.931
SRR8316907Gold flowering stage 318.792
SRR8316908Gold flowering stage 188.738
SRP132670SRR6706286Control22.160
SRR6706287Light intensity 50%27.543
SRR6706288Light intensity 20%29.590
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.385
CNS0095593Slightly white alabastrum(diploid) 211.569
CNS0095594Slightly white alabastrum(diploid) 311.313
CNS0095595Whole white alabastrum(diploid) 211.450
CNS0095596Whole white alabastrum(diploid) 312.664
CNS0095597Whole white alabastrum(diploid) 412.981
CNS0095598Silvery flower (diploied) 145.232
CNS0095599Silvery flower (diploied) 238.599
CNS0095600Silvery flower (diploied) 3175.622
CNS0095601Golden flower (diploid) 176.382
CNS0095602Golden flower (diploid) 2227.053
CNS0095603Golden flower (diploid) 3213.577
CNS0095604Slightly white alabastrum(tetraploid) 116.462
CNS0095605Slightly white alabastrum(tetraploid) 215.517
CNS0095606Slightly white alabastrum(tetraploid) 331.796
CNS0095607Whole white alabastrum(tetraploid) 110.447
CNS0095608Whole white alabastrum(tetraploid) 28.881
CNS0095609Whole white alabastrum(tetraploid) 332.447
CNS0095610Silvery flower (tetraploid) 149.661
CNS0095611Silvery flower (tetraploid) 264.119
CNS0095612Silvery flower (tetraploid) 359.941
CNS0095613Golden flower (tetraploid) 162.939
CNS0095614Golden flower (tetraploid) 261.777
CNS0095615Golden flower (tetraploid) 3129.274
CRA001975CRR073297Stem 123.053
CRR073298Stem 221.815
CRR073299Stem 319.553
CRR073300Leaf 123.790
CRR073301Leaf 220.043
CRR073302Leaf 320.840
CRR073303Juvenile bud 120.669
CRR073304Juvenile bud 220.556
CRR073305Juvenile bud 314.874
CRR073306Third green 126.172
CRR073307Third green 221.689
CRR073308Third green 326.438
CRR073309Second white 1194.027
CRR073310Second white 2184.591
CRR073311Second white 3320.880
CRR073312Silver flowering 1308.375
CRR073313Silver flowering 2248.579
CRR073314Silver flowering 3218.133
CRR073315Gold flowering 18.416
CRR073316Gold flowering 213.775
CRR073317Gold flowering 39.149
CRR073318Tawny withering 16.264
CRR073319Tawny withering 27.498
CRR073320Tawny withering 38.883