Gene detail

Detail information of GWHGAAZE010924

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267774.2	3.0821E-136	PREDICTED: probable receptor-like protein kinase At5g39020 [Vitis vinifera]
Swissprot	tr\|D7SFH9\|GPDL2_ARATH	1E-30	Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 {ECO:0000305} (Precursor)
trEMBL	tr\|F6HAL6\|F6HAL6_VITVI	7E-135	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49273.1}
TAIR10	AT1G66920.2	5E-31	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35273874	35280775	+
GWHAAZE00000003	mRNA	35273874	35280775	+
GWHAAZE00000003	exon	35273874	35273886	+
GWHAAZE00000003	exon	35277720	35278364	+
GWHAAZE00000003	exon	35278749	35278775	+
GWHAAZE00000003	exon	35280258	35280775	+
GWHAAZE00000003	CDS	35273874	35273886	+
GWHAAZE00000003	CDS	35277720	35278364	+
GWHAAZE00000003	CDS	35278749	35278775	+
GWHAAZE00000003	CDS	35280258	35280775	+

Transcript Sequence
>GWHTAAZE010936 ATGCCAGCACCCTGTCGCCTTGGAGTGGGTGGTGCAAATGATGGGTGTAATATTACCAAATGCGGGGAAAATGGTCCTCCCATTCGATTCCCATTTCGACTTAAACCTAACCAGCTAAAACATTGCGGCTACCCAGGGTTCGAGCTATCTTGCAACCACATGAACCAAACAGTGCTCGAAATTCCGGTCGCTATAGAGGTGGTGGTTGACGAAATCGACTACATATCACAAAGTATTTATGTACATGATCCCCATAATTGCTTTCTGGCACAGGTTCCAAGGCTCAATCTATCTGCTTCTCCTTTCAATTTCATTACATCCTATGATATTGCTTTGTTCAATTGTTCGCCAGCCGAAAGAAACATTCCAACCTTCGTCCCTTGCCTTAGTGGCCCTGGGTATCAAATTTATGCAGAGTACTATGGATCTTTGAATGATGAATTAACAAATTGTGTTAAGATCCATAACTTCTCATCACCTGGACTTGATTTGTTTGAGTACCCGCAAAGCGAACGTCAGCTGTCTTGGAAGGAACCAAATTGTAGCATGTGCGAATCAAAAGGCAAAATGTGTAGGTGGAAGAATTATAACACTACAACAGCAGCAGCAGCAGGGGAACCTGAACTTGAATGTGTGCAAATGCCCAAAAAACCCACAGGTGCATCAAAGATACTTCACCTTGCAGTATTTGGTGCAATTTTCCTTTGCCTGGTAATTATCACACTCTACCTCATTTACAACTCTTTCAAAAGAAAGAAAGAGGACCAAGTAAAAGTTGAAAGATTTTTGGAGGATTACAAAGCTCTCAAGCCCAGCAGATACTCGTTTGTTGATATTAAAAAGATAACGAACAATTTCAAGGACAAATTAGGAGAGGGTTCTTATGGTACTGTGTTCAAAGGGAATCTTTCGAGCGAAATATTTGTCGCCATTAAGGTCCTTGAAAGCTCCATGGAAAATGGCAAGGAGTTTATTAACGAAGTTGGAGCGATGGGCCAGATCCACCACGTCAACGTTGTTCGTTTGGTTGGGTTTTGTGCTGATGGAATTAATCGAGCTCTCATTTACGAGTTCTTACCAAACGAGTCCTTAGAAAAGTTCATATTCTCCGAAACTCAAAATCAAACCTTCCTTGGTTGGGAAAAATTACAAGACATTGCATTAGGCATTGCCGGGAATCGAGTATCTTCACCAAGGTTGTGA

Network for GWHGAAZE010924

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	16	83	7.50E-17
PF07714.18	PK_Tyr_Ser-Thr	286	390	4.00E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030247	molecular_function	polysaccharide binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.172
	SRR3591706	second leaf	9.724
	SRR3591707	mature leaf	16.223
	SRR3591708	Shoot apex	2.121
	SRR3591709	Stem	1.025
	SRR3591710	White floral bud	0.494
	SRR3591711	White flower	0.744
	SRR3591712	Green floral bud	0.238
	SRR3591713	Yellow flower	0.700
SRP173429	SRR8316895	Juvenile bud stage	1.534
	SRR8316896	Juvenile bud stage	1.310
	SRR8316897	Juvenile bud stage	0.177
	SRR8316894	Third green stage	0.466
	SRR8316900	Third green stage	0.708
	SRR8316901	Third green stage	0.483
	SRR8316898	Complete white stage	0.310
	SRR8316899	Complete white stage	1.717
	SRR8316903	Complete white stage	0.228
	SRR8316902	Silver flowering stage	0.056
	SRR8316904	Silver flowering stage	0.221
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.211
	SRR8316907	Gold flowering stage	0.005
	SRR8316908	Gold flowering stage	0.230
SRP132670	SRR6706286	Control	1.385
	SRR6706287	Light intensity 50%	1.194
	SRR6706288	Light intensity 20%	0.660
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.271
	CNS0095593	Slightly white alabastrum(diploid) 2	0.744
	CNS0095594	Slightly white alabastrum(diploid) 3	0.551
	CNS0095595	Whole white alabastrum(diploid) 2	0.179
	CNS0095596	Whole white alabastrum(diploid) 3	0.044
	CNS0095597	Whole white alabastrum(diploid) 4	0.137
	CNS0095598	Silvery flower (diploied) 1	1.480
	CNS0095599	Silvery flower (diploied) 2	1.933
	CNS0095600	Silvery flower (diploied) 3	0.289
	CNS0095601	Golden flower (diploid) 1	0.744
	CNS0095602	Golden flower (diploid) 2	0.513
	CNS0095603	Golden flower (diploid) 3	0.588
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.027
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.168
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.017
	CNS0095610	Silvery flower (tetraploid) 1	0.047
	CNS0095611	Silvery flower (tetraploid) 2	0.048
	CNS0095612	Silvery flower (tetraploid) 3	0.029
	CNS0095613	Golden flower (tetraploid) 1	0.084
	CNS0095614	Golden flower (tetraploid) 2	0.159
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.480
	CRR073298	Stem 2	0.528
	CRR073299	Stem 3	0.674
	CRR073300	Leaf 1	0.659
	CRR073301	Leaf 2	0.413
	CRR073302	Leaf 3	0.156
	CRR073303	Juvenile bud 1	0.132
	CRR073304	Juvenile bud 2	0.117
	CRR073305	Juvenile bud 3	0.076
	CRR073306	Third green 1	0.050
	CRR073307	Third green 2	0.017
	CRR073308	Third green 3	0.012
	CRR073309	Second white 1	0.008
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.006
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.590
	CRR073316	Gold flowering 2	6.430
	CRR073317	Gold flowering 3	5.317
	CRR073318	Tawny withering 1	1.346
	CRR073319	Tawny withering 2	1.316
	CRR073320	Tawny withering 3	0.784