Gene detail

Detail information of GWHGAAZE010772

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010107245.1	0	Uncharacterized WD repeat-containing protein [Morus notabilis]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	0.0000001	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|W9S4F6\|W9S4F6_9ROSA	0	Uncharacterized WD repeat-containing protein {ECO:0000313\|EMBL:EXC14269.1}
TAIR10	AT1G55680.1	8E-150	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	24186123	24194557	-
GWHAAZE00000003	mRNA	24186123	24194557	-
GWHAAZE00000003	exon	24194531	24194557	-
GWHAAZE00000003	exon	24193718	24193885	-
GWHAAZE00000003	exon	24193519	24193605	-
GWHAAZE00000003	exon	24191616	24191750	-
GWHAAZE00000003	exon	24188738	24188829	-
GWHAAZE00000003	exon	24188537	24188642	-
GWHAAZE00000003	exon	24187530	24187616	-
GWHAAZE00000003	exon	24186123	24186536	-
GWHAAZE00000003	CDS	24194531	24194557	-
GWHAAZE00000003	CDS	24193718	24193885	-
GWHAAZE00000003	CDS	24193519	24193605	-
GWHAAZE00000003	CDS	24191616	24191750	-
GWHAAZE00000003	CDS	24188738	24188829	-
GWHAAZE00000003	CDS	24188537	24188642	-
GWHAAZE00000003	CDS	24187530	24187616	-
GWHAAZE00000003	CDS	24186123	24186536	-

Transcript Sequence
>GWHTAAZE010784 ATGAGAGCATCCACTGATGATTGCAAGCTTACGAAGGTGACGGATACATCTTGTCGTGAAGCGAGGAAAGGAAAAGATATACAGGGAATACCTTGGGAGAGATTGAATATCACAAGGCAAAGTTACAGATTGACAAGGCTTGAACAATACAGGAATTATGAGAATATCCCTTTATCTGGTCAAGCTGTAGATAAGGAATGCCAACAAATGCAAAAGGGTGGCAACTACTACGATTTCTTTTACAATACAAGATTGGTGAAGCCTACAATCCTCCATTTCCAGCTTAGGAACTTGGTGTGGTCTACTTCAAAACATGATGTATATCTCATGTCTAACTACTCAGTTATGCACTGGTCATCATTATCTCACAACTTGTCTGAGGTCCTCAATTTCTCCGGACATATAGCTCCTACCAAGCGATTGGATGAACTGGGAGTAAGTTTTTGCACAAGGACCACTTATGAGGAGAATGCCATTACAAATGCTCTTGAGATATATGACAGCACAAGCGGTGGAATCCATTTTGTGGCATCCAACAATGATTGTGGCGTTAGAGAATATGACATGGAGAGGTTTCAGCTTATAAATCACTTCCGCTTTCCTTGGCCAGTAAATCATACATCGGTGAGTCCAGACCGCAAGCTTCTCTGTGTTGTTGCAGATCACCTTGATGGGTTGCTTGTGGATTCCCAAAGTGGAAAGACTGTAGGGTCAGTTGTTGGCCATCTAGACTACTCGTTTGCTTCTGCGTGGCACCCAGATGGACAAACCTTTGCAACGGGGAATCAGGACAAGACCTGCCGAGTATGGGATTTGAGAAACCTATCATTACCAGTAGCAGTTCTCAAGGGGAACATGGGCGCTGTCCGATCTGTTCGTTTCTCATCCGATGGCCAGTTTTTGGTGGTGGCCGAACCTGCAGATTTCGTACATGTGTACAATACCAAGGTAGATTATGAGAAGCGGCAAGAGATCGATTTCTTTGGGGAGATTTCTGGGGTTTCTCTTAGTCCAGACGATGAATCGCTCTTTATAGGCGTGTGGGACCGCACTTACGCGAGCTTGTTGCAGTACAATAGAAGGCATGCATATGGATACCTTGATACATTTACGTGA

Network for GWHGAAZE010772

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	234	271	4.90E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.122
	SRR3591706	second leaf	33.741
	SRR3591707	mature leaf	72.548
	SRR3591708	Shoot apex	45.285
	SRR3591709	Stem	90.696
	SRR3591710	White floral bud	89.997
	SRR3591711	White flower	94.915
	SRR3591712	Green floral bud	67.330
	SRR3591713	Yellow flower	79.980
SRP173429	SRR8316895	Juvenile bud stage	55.934
	SRR8316896	Juvenile bud stage	81.415
	SRR8316897	Juvenile bud stage	55.215
	SRR8316894	Third green stage	24.733
	SRR8316900	Third green stage	70.009
	SRR8316901	Third green stage	86.213
	SRR8316898	Complete white stage	52.330
	SRR8316899	Complete white stage	109.358
	SRR8316903	Complete white stage	101.515
	SRR8316902	Silver flowering stage	54.185
	SRR8316904	Silver flowering stage	65.488
	SRR8316905	Silver flowering stage	29.802
	SRR8316906	Gold flowering stage	92.278
	SRR8316907	Gold flowering stage	107.162
	SRR8316908	Gold flowering stage	98.784
SRP132670	SRR6706286	Control	42.828
	SRR6706287	Light intensity 50%	46.960
	SRR6706288	Light intensity 20%	47.662
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	79.119
	CNS0095593	Slightly white alabastrum(diploid) 2	90.095
	CNS0095594	Slightly white alabastrum(diploid) 3	90.660
	CNS0095595	Whole white alabastrum(diploid) 2	74.304
	CNS0095596	Whole white alabastrum(diploid) 3	58.984
	CNS0095597	Whole white alabastrum(diploid) 4	67.997
	CNS0095598	Silvery flower (diploied) 1	98.744
	CNS0095599	Silvery flower (diploied) 2	89.620
	CNS0095600	Silvery flower (diploied) 3	81.069
	CNS0095601	Golden flower (diploid) 1	86.321
	CNS0095602	Golden flower (diploid) 2	84.170
	CNS0095603	Golden flower (diploid) 3	85.261
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.934
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.010
	CNS0095606	Slightly white alabastrum(tetraploid) 3	81.906
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.948
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.799
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.403
	CNS0095610	Silvery flower (tetraploid) 1	95.830
	CNS0095611	Silvery flower (tetraploid) 2	71.595
	CNS0095612	Silvery flower (tetraploid) 3	83.905
	CNS0095613	Golden flower (tetraploid) 1	64.097
	CNS0095614	Golden flower (tetraploid) 2	73.935
	CNS0095615	Golden flower (tetraploid) 3	68.293
CRA001975	CRR073297	Stem 1	63.069
	CRR073298	Stem 2	59.181
	CRR073299	Stem 3	63.395
	CRR073300	Leaf 1	74.803
	CRR073301	Leaf 2	79.254
	CRR073302	Leaf 3	77.329
	CRR073303	Juvenile bud 1	74.221
	CRR073304	Juvenile bud 2	82.292
	CRR073305	Juvenile bud 3	65.208
	CRR073306	Third green 1	69.230
	CRR073307	Third green 2	54.273
	CRR073308	Third green 3	69.635
	CRR073309	Second white 1	43.724
	CRR073310	Second white 2	51.857
	CRR073311	Second white 3	43.267
	CRR073312	Silver flowering 1	47.414
	CRR073313	Silver flowering 2	40.001
	CRR073314	Silver flowering 3	47.165
	CRR073315	Gold flowering 1	61.593
	CRR073316	Gold flowering 2	82.319
	CRR073317	Gold flowering 3	41.195
	CRR073318	Tawny withering 1	312.191
	CRR073319	Tawny withering 2	542.359
	CRR073320	Tawny withering 3	314.161