Gene detail

Detail information of GWHGAAZE010761

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081084.1	0	PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Sesamum indicum]
Swissprot	tr\|P18616\|NRPB1_ARATH	4E-90	DNA-directed RNA polymerase II subunit 1
trEMBL	tr\|F6GTV9\|F6GTV9_VITVI	0	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}
TAIR10	AT5G60040.1	0	nuclear RNA polymerase C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	23914339	23928057	+
GWHAAZE00000003	mRNA	23914339	23928057	+
GWHAAZE00000003	exon	23914339	23914567	+
GWHAAZE00000003	exon	23916249	23916433	+
GWHAAZE00000003	exon	23917061	23917173	+
GWHAAZE00000003	exon	23917944	23918043	+
GWHAAZE00000003	exon	23918660	23918875	+
GWHAAZE00000003	exon	23918951	23919099	+
GWHAAZE00000003	exon	23919195	23919336	+
GWHAAZE00000003	exon	23919642	23919782	+
GWHAAZE00000003	exon	23920562	23920750	+
GWHAAZE00000003	exon	23926786	23926922	+
GWHAAZE00000003	exon	23927928	23928057	+
GWHAAZE00000003	five_prime_UTR	23914339	23914344	+
GWHAAZE00000003	CDS	23914345	23914567	+
GWHAAZE00000003	CDS	23916249	23916433	+
GWHAAZE00000003	CDS	23917061	23917173	+
GWHAAZE00000003	CDS	23917944	23918043	+
GWHAAZE00000003	CDS	23918660	23918875	+
GWHAAZE00000003	CDS	23918951	23919099	+
GWHAAZE00000003	CDS	23919195	23919336	+
GWHAAZE00000003	CDS	23919642	23919782	+
GWHAAZE00000003	CDS	23920562	23920750	+
GWHAAZE00000003	CDS	23926786	23926922	+
GWHAAZE00000003	CDS	23927928	23928057	+

Transcript Sequence
>GWHTAAZE010773 TTATTAATGCTGTTTCTGACCTTGGTTTCTTTGTTATTTTTCTTTCAACAGAGTTGTGCTCGTATACTCTTGGCGGAGAAAGACCGTGTAGACTTCTTGAAAAAGATGAGAAACCCAAAATTGGAGCCTCTGAAGAAGAGTGAGCTTTTCAAAAAGATAGTGAAAAGGTGCACTGCGTTGGCAAGTAGCAAAAAGGCTGTGAAATGTCCCCGTTGTGATTATATAAATGGTTTGGTGAAAAAGGCTGTTGGTGCAGTCGGAGTCTTTCATGATCGTACTAGAGTTATAGATGATAGTTTAGAAGAATGCAAGGCGGCTATTTCTCACACAAAGGAATCCAAGGCGTCAGTCAGTATCAATGGTGCTCTACTGCCTGATAGAGTTCTTAATCTTTTCAAGAGGATGATTGATGAGGATTGTGAGATGCTTTATCTTAATGATAGACCAGAGAAGCTCATTGTGACAAATATTGCAGTACCTCCAATTGCTATTCGCCCTTCTGTCTTTGTTGATGGTGGAACACAGAGCAATGAGAATGACATAACAGAGAGGTTAAAACGAATTATTCAAGCAAATGCTAGTCTTCACCAGGAGTTATCAGAAACGAGTACTGCTGGCAAAAATCTGGCTGGTTGGTTGGATCTACAAATGGAGGTTGCGCTGTATATAAACAGTGATGTACGCGGAGTGCCTCAGCATATGCAAACTGCCAGGCCGTTGAGTGGCTTTGTTCAACGCCTTAAAGGAAAACAGGGTCGTTTTCGTGGAAACCTGTCCGGGAAGCGTGTTGAGTTTACTGGAAGGACTGTTATATCCCCCGATCCTAATTTGAAAATTACTGAGGTGGCAGTTCCTATCTTAATGGCACGGATTTTAACGTTTCCCGAGCGTGTGTCACATCATAATATAGAAAAGTTGAGGCAGTGTGTCCGTAATGGGCCTAACAAATATCCTGGTGCAAAGTTTATAAGGCAGCCTGATGGCACCTCGATGGCGTTGATGTTCTCTTCAAGAAAGCGCCTTGCCGATGAACTGAAATTTGGCTATGTTGTTGAACGACATTTGGAAGATGGGGACGTTGTTCTTTTTAACAGACAACCAAGTTTGCATCGGATGTCAATCATGTGCCATAGGGCAAGGATAATGCCCTGGCGTACATTAAGATTTAATGAATCTGTTTGCAATCCATACAATGCCGATTTTGATGGCGATGAGATGAATATGCATGTTCCGCAAACAGAAGAGGCTCGCACAGAGGCTTTGATGTTGATGGGGGTGCAAAACAATCTGTGCACACCAAAAAATGGAGAAATTTTGGTTGCTTCAACCCAAGATTTTCTGACCTCTTCTTTTCTCATAACAAGGAAGGACACATTTTACGATCGTGCTTCTTTTTCACAAATCTGTTCTTATATGGGGGATGCAATGGATCCAATTGATTTGCCCACGCCAGCATTAGTCATGCCAATAGAGCTCTGGACCGGTAAACAGGTGTTTAGTGTTCTATTGCGGCCACATGCAAGTATGGGAGTATATGTGAATCTTACTGTTACAGAGAAGACTTACATCAAGTCTCGGGAGACAATGTGTCCAAATGATGGAACAGGGAATGGCAACAAGGACGGTCTCTACTCTGTTCTTCTCAGGGACTACAATGCACATGGTGCTGCTACTTGTATGAATCGTCTAGCAAAATTGAGGTATTCTTTTAACATATGTGCTTTACGATGA

Network for GWHGAAZE010761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04997.13	RNA_pol_Rpb1_1	15	256	9.90E-39
PF00623.21	RNA_pol_Rpb1_2	258	424	2.10E-75
PF04983.19	RNA_pol_Rpb1_3	427	568	2.70E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03018	RPC1, POLR3A	RNA polymerase	map03020
K03018	RPC1, POLR3A	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.952
	SRR3591706	second leaf	1.496
	SRR3591707	mature leaf	1.008
	SRR3591708	Shoot apex	2.773
	SRR3591709	Stem	2.664
	SRR3591710	White floral bud	4.118
	SRR3591711	White flower	4.883
	SRR3591712	Green floral bud	3.434
	SRR3591713	Yellow flower	3.792
SRP173429	SRR8316895	Juvenile bud stage	2.517
	SRR8316896	Juvenile bud stage	3.765
	SRR8316897	Juvenile bud stage	1.166
	SRR8316894	Third green stage	1.557
	SRR8316900	Third green stage	3.711
	SRR8316901	Third green stage	3.388
	SRR8316898	Complete white stage	0.924
	SRR8316899	Complete white stage	4.677
	SRR8316903	Complete white stage	2.699
	SRR8316902	Silver flowering stage	0.667
	SRR8316904	Silver flowering stage	2.184
	SRR8316905	Silver flowering stage	0.614
	SRR8316906	Gold flowering stage	2.025
	SRR8316907	Gold flowering stage	1.968
	SRR8316908	Gold flowering stage	1.857
SRP132670	SRR6706286	Control	4.954
	SRR6706287	Light intensity 50%	5.105
	SRR6706288	Light intensity 20%	5.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.877
	CNS0095593	Slightly white alabastrum(diploid) 2	0.494
	CNS0095594	Slightly white alabastrum(diploid) 3	0.951
	CNS0095595	Whole white alabastrum(diploid) 2	1.464
	CNS0095596	Whole white alabastrum(diploid) 3	0.777
	CNS0095597	Whole white alabastrum(diploid) 4	0.682
	CNS0095598	Silvery flower (diploied) 1	1.391
	CNS0095599	Silvery flower (diploied) 2	1.082
	CNS0095600	Silvery flower (diploied) 3	4.097
	CNS0095601	Golden flower (diploid) 1	0.566
	CNS0095602	Golden flower (diploid) 2	2.553
	CNS0095603	Golden flower (diploid) 3	2.744
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.637
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.480
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.425
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.811
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.376
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.294
	CNS0095610	Silvery flower (tetraploid) 1	4.731
	CNS0095611	Silvery flower (tetraploid) 2	4.161
	CNS0095612	Silvery flower (tetraploid) 3	3.164
	CNS0095613	Golden flower (tetraploid) 1	1.067
	CNS0095614	Golden flower (tetraploid) 2	2.176
	CNS0095615	Golden flower (tetraploid) 3	3.164
CRA001975	CRR073297	Stem 1	4.147
	CRR073298	Stem 2	3.024
	CRR073299	Stem 3	1.787
	CRR073300	Leaf 1	4.345
	CRR073301	Leaf 2	2.530
	CRR073302	Leaf 3	1.976
	CRR073303	Juvenile bud 1	1.453
	CRR073304	Juvenile bud 2	1.513
	CRR073305	Juvenile bud 3	2.885
	CRR073306	Third green 1	0.454
	CRR073307	Third green 2	0.092
	CRR073308	Third green 3	0.799
	CRR073309	Second white 1	0.175
	CRR073310	Second white 2	1.419
	CRR073311	Second white 3	0.725
	CRR073312	Silver flowering 1	0.611
	CRR073313	Silver flowering 2	0.339
	CRR073314	Silver flowering 3	0.539
	CRR073315	Gold flowering 1	0.139
	CRR073316	Gold flowering 2	1.035
	CRR073317	Gold flowering 3	0.205
	CRR073318	Tawny withering 1	1.263
	CRR073319	Tawny withering 2	0.464
	CRR073320	Tawny withering 3	0.915