Gene detail

Detail information of GWHGAAZE010746

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18113.1	3.50679E-94	unnamed protein product [Coffea canephora]
Swissprot	tr\|O04922\|GPX2_ARATH	7E-88	Probable glutathione peroxidase 2
trEMBL	tr\|A0A068VEI8\|A0A068VEI8_COFCA	1E-94	Glutathione peroxidase {ECO:0000256\|RuleBase:RU000499}
TAIR10	AT2G31570.1	9E-70	glutathione peroxidase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	23049800	23059692	-
GWHAAZE00000003	mRNA	23049800	23059692	-
GWHAAZE00000003	exon	23059648	23059692	-
GWHAAZE00000003	exon	23058101	23058177	-
GWHAAZE00000003	exon	23057482	23057543	-
GWHAAZE00000003	exon	23057151	23057269	-
GWHAAZE00000003	exon	23050392	23050559	-
GWHAAZE00000003	exon	23049800	23049877	-
GWHAAZE00000003	CDS	23059648	23059692	-
GWHAAZE00000003	CDS	23058101	23058177	-
GWHAAZE00000003	CDS	23057482	23057543	-
GWHAAZE00000003	CDS	23057151	23057269	-
GWHAAZE00000003	CDS	23050392	23050559	-
GWHAAZE00000003	CDS	23049800	23049877	-

Transcript Sequence
>GWHTAAZE010758 ATGGCTCAAGAATCATCCAAATCCATCTATGATTTCACTGTTAAGGATGTTAGTGGAAATGATGTACCTCTAAGCAATTACAATGGAAAGGTTCTCCTAATTGTCAATGTTGCTTCTAAATGTGGTTTAACGCAATCAAACTACAAAGAGTTGAACATATTATATGAAAAGTACAAAGGCCAAGATTTTGAGATTTTGGCATTTCCTTGCAACCAATTTGGCTGGCAAGAACCTGGAACTAATGAGGAGATCAAGGAAACAGTATGCACTAGGTTCAAAGCTGAGTTCCCAATATTCAATAAGATTGAGGTGAATGGCAAGAATGCAGCACCATTGTACAAGTACTTAAAAGCAGAGAAAGGGGGATTGTTGGTCGATGGAATCAAATGGAACTTCACCAAGTTTTTGGTAAACAAACAAGGCAAAGTTGTGGAGAGATATGGCCCTAACACTGCACCCCTTCAAATTGAGAAATGGCTGTTGATTGTTCAATTTCCTTTGTTCTATTCATTGCAGAAAGACATTCAAAATCTCTTGGGATCTTCTTAA

Network for GWHGAAZE010746

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00255.20	GSHPx	9	117	3.20E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00432	gpx, btuE, bsaA	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Glutathione metabolism	map00480
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004602	molecular_function	glutathione peroxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.854
	SRR3591706	second leaf	34.958
	SRR3591707	mature leaf	16.840
	SRR3591708	Shoot apex	36.144
	SRR3591709	Stem	17.718
	SRR3591710	White floral bud	98.489
	SRR3591711	White flower	112.403
	SRR3591712	Green floral bud	70.938
	SRR3591713	Yellow flower	207.422
SRP173429	SRR8316895	Juvenile bud stage	7.824
	SRR8316896	Juvenile bud stage	11.499
	SRR8316897	Juvenile bud stage	28.082
	SRR8316894	Third green stage	6.762
	SRR8316900	Third green stage	53.292
	SRR8316901	Third green stage	44.095
	SRR8316898	Complete white stage	27.828
	SRR8316899	Complete white stage	37.974
	SRR8316903	Complete white stage	36.428
	SRR8316902	Silver flowering stage	29.200
	SRR8316904	Silver flowering stage	34.994
	SRR8316905	Silver flowering stage	19.409
	SRR8316906	Gold flowering stage	103.042
	SRR8316907	Gold flowering stage	63.750
	SRR8316908	Gold flowering stage	136.334
SRP132670	SRR6706286	Control	2.694
	SRR6706287	Light intensity 50%	4.414
	SRR6706288	Light intensity 20%	6.342
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.233
	CNS0095593	Slightly white alabastrum(diploid) 2	14.762
	CNS0095594	Slightly white alabastrum(diploid) 3	14.673
	CNS0095595	Whole white alabastrum(diploid) 2	16.865
	CNS0095596	Whole white alabastrum(diploid) 3	25.745
	CNS0095597	Whole white alabastrum(diploid) 4	13.445
	CNS0095598	Silvery flower (diploied) 1	19.902
	CNS0095599	Silvery flower (diploied) 2	22.618
	CNS0095600	Silvery flower (diploied) 3	81.748
	CNS0095601	Golden flower (diploid) 1	30.109
	CNS0095602	Golden flower (diploid) 2	49.887
	CNS0095603	Golden flower (diploid) 3	50.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.145
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.051
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.935
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.769
	CNS0095609	Whole white alabastrum(tetraploid) 3	114.587
	CNS0095610	Silvery flower (tetraploid) 1	214.780
	CNS0095611	Silvery flower (tetraploid) 2	266.992
	CNS0095612	Silvery flower (tetraploid) 3	446.222
	CNS0095613	Golden flower (tetraploid) 1	293.149
	CNS0095614	Golden flower (tetraploid) 2	265.088
	CNS0095615	Golden flower (tetraploid) 3	384.072
CRA001975	CRR073297	Stem 1	7.365
	CRR073298	Stem 2	6.135
	CRR073299	Stem 3	3.134
	CRR073300	Leaf 1	19.235
	CRR073301	Leaf 2	15.550
	CRR073302	Leaf 3	20.815
	CRR073303	Juvenile bud 1	15.549
	CRR073304	Juvenile bud 2	35.161
	CRR073305	Juvenile bud 3	4.636
	CRR073306	Third green 1	15.805
	CRR073307	Third green 2	13.283
	CRR073308	Third green 3	11.924
	CRR073309	Second white 1	7.216
	CRR073310	Second white 2	36.198
	CRR073311	Second white 3	19.634
	CRR073312	Silver flowering 1	7.263
	CRR073313	Silver flowering 2	2.485
	CRR073314	Silver flowering 3	7.510
	CRR073315	Gold flowering 1	3.583
	CRR073316	Gold flowering 2	1.363
	CRR073317	Gold flowering 3	2.210
	CRR073318	Tawny withering 1	8.375
	CRR073319	Tawny withering 2	3.848
	CRR073320	Tawny withering 3	3.146