Detail information of GWHGAAZE010723


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI36652.31.38601E-41unnamed protein product [Vitis vinifera]
Swissprottr|Q9SIC4|NTH1_ARATH2E-33Endonuclease III homolog 1, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03183} (Precursor)
trEMBLtr|D7U1N6|D7U1N6_VITVI5E-42Putative uncharacterized protein {ECO:0000313|EMBL:CBI36652.3}
TAIR10AT2G31450.19E-29DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene2032668020330700-
GWHAAZE00000003mRNA2032668020330700-
GWHAAZE00000003exon2032668020326817-
GWHAAZE00000003exon2032695720327048-
GWHAAZE00000003exon2032786020327897-
GWHAAZE00000003exon2032800120328071-
GWHAAZE00000003exon2032849920328617-
GWHAAZE00000003exon2032938520329459-
GWHAAZE00000003exon2033062820330700-
GWHAAZE00000003CDS2033062820330700-
GWHAAZE00000003CDS2032938520329459-
GWHAAZE00000003CDS2032849920328617-
GWHAAZE00000003CDS2032800120328071-
GWHAAZE00000003CDS2032786020327897-
GWHAAZE00000003CDS2032704720327048-
GWHAAZE00000003three_prime_UTR2032695720327046-
GWHAAZE00000003three_prime_UTR2032668020326817-
Transcript Sequence

Network for GWHGAAZE010723

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10773NTH Base excision repair map03410

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.281
SRR3591706second leaf5.537
SRR3591707mature leaf7.547
SRR3591708Shoot apex12.593
SRR3591709Stem7.497
SRR3591710White floral bud8.874
SRR3591711White flower6.008
SRR3591712Green floral bud15.319
SRR3591713Yellow flower6.878
SRP173429 SRR8316895Juvenile bud stage 3.543
SRR8316896Juvenile bud stage 4.181
SRR8316897Juvenile bud stage 4.485
SRR8316894Third green stage 2.220
SRR8316900Third green stage 4.171
SRR8316901Third green stage 3.911
SRR8316898Complete white stage 1.372
SRR8316899Complete white stage 4.945
SRR8316903Complete white stage 1.277
SRR8316902Silver flowering stage0.542
SRR8316904Silver flowering stage0.930
SRR8316905Silver flowering stage0.744
SRR8316906Gold flowering stage 3.082
SRR8316907Gold flowering stage 1.422
SRR8316908Gold flowering stage 6.062
SRP132670SRR6706286Control4.554
SRR6706287Light intensity 50%4.356
SRR6706288Light intensity 20%4.997
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.794
CNS0095593Slightly white alabastrum(diploid) 23.042
CNS0095594Slightly white alabastrum(diploid) 32.107
CNS0095595Whole white alabastrum(diploid) 21.682
CNS0095596Whole white alabastrum(diploid) 32.107
CNS0095597Whole white alabastrum(diploid) 41.700
CNS0095598Silvery flower (diploied) 12.308
CNS0095599Silvery flower (diploied) 23.489
CNS0095600Silvery flower (diploied) 32.427
CNS0095601Golden flower (diploid) 11.689
CNS0095602Golden flower (diploid) 22.112
CNS0095603Golden flower (diploid) 32.359
CNS0095604Slightly white alabastrum(tetraploid) 110.240
CNS0095605Slightly white alabastrum(tetraploid) 28.261
CNS0095606Slightly white alabastrum(tetraploid) 35.944
CNS0095607Whole white alabastrum(tetraploid) 111.420
CNS0095608Whole white alabastrum(tetraploid) 29.600
CNS0095609Whole white alabastrum(tetraploid) 39.770
CNS0095610Silvery flower (tetraploid) 13.861
CNS0095611Silvery flower (tetraploid) 23.712
CNS0095612Silvery flower (tetraploid) 36.222
CNS0095613Golden flower (tetraploid) 11.485
CNS0095614Golden flower (tetraploid) 22.358
CNS0095615Golden flower (tetraploid) 33.051
CRA001975CRR073297Stem 17.450
CRR073298Stem 26.291
CRR073299Stem 34.641
CRR073300Leaf 15.189
CRR073301Leaf 23.548
CRR073302Leaf 34.027
CRR073303Juvenile bud 14.237
CRR073304Juvenile bud 23.505
CRR073305Juvenile bud 36.826
CRR073306Third green 10.472
CRR073307Third green 20.534
CRR073308Third green 30.219
CRR073309Second white 11.097
CRR073310Second white 21.138
CRR073311Second white 30.482
CRR073312Silver flowering 10.252
CRR073313Silver flowering 20.784
CRR073314Silver flowering 30.251
CRR073315Gold flowering 17.447
CRR073316Gold flowering 29.707
CRR073317Gold flowering 35.929
CRR073318Tawny withering 14.728
CRR073319Tawny withering 25.512
CRR073320Tawny withering 34.056