Gene detail

Detail information of GWHGAAZE010706

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	5.9852E-106	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FID9\|Y5389_ARATH	6E-92	Probable receptor-like protein kinase At5g38990 (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	2E-106	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT5G38990.1	4E-84	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	20037490	20045644	-
GWHAAZE00000003	mRNA	20037490	20045644	-
GWHAAZE00000003	exon	20044156	20045644	-
GWHAAZE00000003	exon	20043516	20043739	-
GWHAAZE00000003	exon	20037915	20038259	-
GWHAAZE00000003	exon	20037490	20037729	-
GWHAAZE00000003	CDS	20044156	20045644	-
GWHAAZE00000003	CDS	20043516	20043739	-
GWHAAZE00000003	CDS	20037915	20038259	-
GWHAAZE00000003	CDS	20037490	20037729	-

Transcript Sequence
>GWHTAAZE010718 ATGTTCCGTCATCAACTGCAGATTCTTACCTTCCTCTCCTTCTTCTTCCTATATAATTCGATTGTTACAAATGAAGGTGACCTTCCTACTTCTAATTCCCTTGGTGATGATGTTGATTTCCTTCACTCGGAAAACAATGTTGAACAAGGTCAAATCTCTGTGCTTACTGCTTTAAAGCCTCCAAAATTCATGTCCCCTTTTAGCCGTGTGAACACCATTGCAACTGGTGTGATAATTGTAATCACCCTATTGAACATCATCGTTTATAAATTGCGGGAACCAAACCTTGGCTCAACCCAGCAACTTCAAGATCAAGAAGCAAACCTTGGAGATCAGAAAGCAAGTAACAAGTACTCTGCCTTGGCAACAGACCAATTGCCTCGTCGTTTTTCACTTCCTGAAATCTTATCTGCGACCAACAACTTTGATGATTCAAAGGTCATTGGGAGAGGCGGATTTGGCAACGTGTACAAAGGAGTTCTTGACAGCGGGGCAGTTACTGTTGCCATTAAGCGTTTGAATCTTGCTTCATCCAAACAAGGAGCCATTGAATTTCTTACTGAGATTGAGATGCTTTCAAAATTTCGGCATCGCAATCTTATATCTCTAATCGGCTATTGCGAGGATTGTGACGAAATGATACTTGTTTATGAATATATGAACCGCGGAACTCTAGCGGGCTATATTTACAAAAATGATAGAGGTGCTAATAATTCTGTTCTATCTTGGGTGCAATGTCTCAAAATTTGTTTAGATGCTGCACGTGGTTTGGAGTATCTCCATACAGGTACTAATGTCATACACCGTGACATGAAGAGTTCTAACATTTTACTAGATGAGAATTTGACAGCGAAGATTTCAGATTTTGGGCTGTCTAAACTAGGCCCCAAAAATGATTGGTGCAGCCATGTTAGCACTCAAGTTAAAGGCACAAATGGTTATCTGGATCCAGAATATAAGAAGACTCGTAAACTGACTAAGAAATCCGATGTTTACTCATTTGGGGTGGTACTGTTGGAAGTACTTTCCGGAAAAGCAGCATTTGATTTTGCACGAACTGATGAGCAGCACAGTCTTGCTATCTGGGCTCGACATTGCATCAAAGAACACGCTGTAAATGAAATAATCAATCCCAGTTTGACTAGCGAAATAGCACTGCCGAATTCTTTGGATTCCTTTCTCAAAATTGCCAATCAATCTGTGCATCCTATTTCCAAAAAGCGGCCTACAATGGCTGAAGTCGTGTTCACACTTGAGTCTGCATTGGCATTGCAAGAGAGAATTGACTCTTCGATTTTCGATCGAAATCTATTAAGTACGGGTTTGGATTTTGGCAATCAATATATTGAGGATACTTGCTCTGGACAACCTTCGGTCACCTATTATGACAGTGACCAGCATCATGAGGAGCAAACTAACAAGACTGACCAAGAGATTGTGGATTATTCCTCAGAACGGCATCAGATTACCGATTCCAGCAATAATCGAGATTTTTACAACCCAAGTATGGAGATGAAGAATGCGGTTGTTAAAACAGCTGGGCCTTTCGGAGGGAATGGTGCAGTAATATGGGACGATGGAGTTCATACTACGATAAGGAAATTGATTATATACTCCGGGCCACTGATTCATTCAATTCAAATTGAATACGATGAAAACGGACAATCGAAATACTCCCAAATGCATGGTAGGATAGAAGGCAAGATGAACACTGTTGAACTTGATTACCCATATGAGTTTCTTGTTTCTGTCTCGGACTACGTTCATTATTATTGTACGATATTGGTTTTTCGTTCACTTACACTTGAAAGCAACAAAAGAACATACGGACGATTTGGTACAGAAGTAGGAAAGCATTACAAGTTTCCATCAAGAAGTGGCAATAAGATTGTAGGTTTCTTTGGGACGTCTGGTTTCTATCTAGATTCCCTAGCAGTTCACTTCCAACCAATAATGCCACAAACTATACATGTCGGCCCTTTCGGAGGACAAAGCGGAGAGTTGTGGGATGATGGAGCTTATACTACAATAGTGAAATTGATCATATACTCCTCGGAAGTCGCACTTAACCATCCATCTGAGTTTCTTATTTCTTTCTCGGGCTACATTGATGAGTTTTATTCGACGATGGTCTTTCATTCACTTACTTTTCAAAGCAACAAAAGAACATATGGACCATTTGGTAGAGAAAAAGGAAGGCGTATCAAGTTTCCATCAAGTGGTAATAAGATCTTAGGTTTCATTGGGAGTTCTGATCACCATCTGGTTTCCCTTGGAGCTAATGTTGTTCAGTCTTGA

Network for GWHGAAZE010706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	143	415	8.50E-50
PF01419.18	Jacalin	523	650	1.50E-25
PF01419.18	Jacalin	685	763	1.20E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.006
	SRR3591706	second leaf	0.060
	SRR3591707	mature leaf	0.107
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.661
	SRR3591711	White flower	0.277
	SRR3591712	Green floral bud	1.251
	SRR3591713	Yellow flower	0.043
SRP173429	SRR8316895	Juvenile bud stage	0.060
	SRR8316896	Juvenile bud stage	0.396
	SRR8316897	Juvenile bud stage	0.091
	SRR8316894	Third green stage	0.208
	SRR8316900	Third green stage	0.180
	SRR8316901	Third green stage	0.223
	SRR8316898	Complete white stage	0.209
	SRR8316899	Complete white stage	0.362
	SRR8316903	Complete white stage	0.211
	SRR8316902	Silver flowering stage	0.524
	SRR8316904	Silver flowering stage	0.513
	SRR8316905	Silver flowering stage	0.326
	SRR8316906	Gold flowering stage	0.545
	SRR8316907	Gold flowering stage	0.116
	SRR8316908	Gold flowering stage	0.115
SRP132670	SRR6706286	Control	0.398
	SRR6706287	Light intensity 50%	0.281
	SRR6706288	Light intensity 20%	0.254
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.024
	CNS0095593	Slightly white alabastrum(diploid) 2	0.063
	CNS0095594	Slightly white alabastrum(diploid) 3	0.221
	CNS0095595	Whole white alabastrum(diploid) 2	0.026
	CNS0095596	Whole white alabastrum(diploid) 3	0.119
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.076
	CNS0095600	Silvery flower (diploied) 3	0.140
	CNS0095601	Golden flower (diploid) 1	0.021
	CNS0095602	Golden flower (diploid) 2	0.193
	CNS0095603	Golden flower (diploid) 3	0.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.179
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.145
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.991
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.514
	CNS0095610	Silvery flower (tetraploid) 1	0.160
	CNS0095611	Silvery flower (tetraploid) 2	0.033
	CNS0095612	Silvery flower (tetraploid) 3	0.044
	CNS0095613	Golden flower (tetraploid) 1	0.056
	CNS0095614	Golden flower (tetraploid) 2	0.069
	CNS0095615	Golden flower (tetraploid) 3	0.279
CRA001975	CRR073297	Stem 1	0.041
	CRR073298	Stem 2	0.024
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.171
	CRR073301	Leaf 2	0.054
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.038
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.069
	CRR073306	Third green 1	0.019
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.017
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.059
	CRR073316	Gold flowering 2	0.185
	CRR073317	Gold flowering 3	0.110
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000