Gene detail

Detail information of GWHGAAZE010659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011084127.1	4.5258E-86	PREDICTED: calmodulin-like protein 3 [Sesamum indicum]
Swissprot	tr\|O22845\|CML5_ARATH	1E-73	Calmodulin-like protein 5
trEMBL	tr\|A0A068UNE4\|A0A068UNE4_COFCA	4E-84	Coffea canephora DH200=94 genomic scaffold, scaffold_42 {ECO:0000313\|EMBL:CDP10060.1}
TAIR10	AT3G07490.1	9E-56	ARF-GAP domain 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	18153236	18153688	+
GWHAAZE00000003	mRNA	18153236	18153688	+
GWHAAZE00000003	exon	18153236	18153688	+
GWHAAZE00000003	CDS	18153236	18153688	+

Transcript Sequence
>GWHTAAZE010671 ATGGACCCCGATGAGCTTAAAAGAGTTTTTCAAATGTTTGATCGAAATGGAGACGGAAGAATCTCAAAGCAAGAACTAAAGGATTCATTAGAGAACATGGGGATCTCCATCCCCGAGGAAGAGTTGACACAAATGATCGAGAAGATAGACGTGAATGGCGATGGTTGTGTCGACATTGATGAATTCGGTGCTTTGTATCAATCCATAATGGATGGACGTGATGAGGACGAAGATATGAGGGAGGCTTTCAATGTTTTTGATCAAAATGGTGACGGGTTTATCACCGTGGACGAGTTGAAATCGGTCTTGGCATCCCTCGGGTTGAAGCAAGGGAAGACGGCGGAGGATTGCAGGATTATGATCACGAAAGTTGATGCAGATGGAGATGGGAGAGTGGATTTTAAGGAGTTCAAGGAGATGATGAGAAAGGGTGGTTTTGCAGCTTTGAGTTGA

Network for GWHGAAZE010659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	5	67	1.50E-15
PF13499.7	EF-hand_7	77	142	4.80E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.269
	SRR3591709	Stem	0.407
	SRR3591710	White floral bud	62.102
	SRR3591711	White flower	1.175
	SRR3591712	Green floral bud	72.690
	SRR3591713	Yellow flower	1.970
SRP173429	SRR8316895	Juvenile bud stage	0.368
	SRR8316896	Juvenile bud stage	0.493
	SRR8316897	Juvenile bud stage	0.403
	SRR8316894	Third green stage	1.138
	SRR8316900	Third green stage	22.561
	SRR8316901	Third green stage	21.735
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.360
	SRR8316904	Silver flowering stage	1.032
	SRR8316905	Silver flowering stage	0.294
	SRR8316906	Gold flowering stage	0.116
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	12.741
	SRR6706287	Light intensity 50%	11.041
	SRR6706288	Light intensity 20%	10.529
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.675
	CNS0095593	Slightly white alabastrum(diploid) 2	6.718
	CNS0095594	Slightly white alabastrum(diploid) 3	4.529
	CNS0095595	Whole white alabastrum(diploid) 2	31.728
	CNS0095596	Whole white alabastrum(diploid) 3	34.218
	CNS0095597	Whole white alabastrum(diploid) 4	46.856
	CNS0095598	Silvery flower (diploied) 1	1.531
	CNS0095599	Silvery flower (diploied) 2	2.555
	CNS0095600	Silvery flower (diploied) 3	1.727
	CNS0095601	Golden flower (diploid) 1	0.546
	CNS0095602	Golden flower (diploid) 2	0.599
	CNS0095603	Golden flower (diploid) 3	0.856
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.084
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.715
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.793
	CNS0095610	Silvery flower (tetraploid) 1	1.324
	CNS0095611	Silvery flower (tetraploid) 2	3.421
	CNS0095612	Silvery flower (tetraploid) 3	4.285
	CNS0095613	Golden flower (tetraploid) 1	1.251
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	2.575
CRA001975	CRR073297	Stem 1	1.072
	CRR073298	Stem 2	0.294
	CRR073299	Stem 3	0.221
	CRR073300	Leaf 1	13.698
	CRR073301	Leaf 2	8.933
	CRR073302	Leaf 3	6.760
	CRR073303	Juvenile bud 1	15.823
	CRR073304	Juvenile bud 2	11.235
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	2.273
	CRR073307	Third green 2	2.772
	CRR073308	Third green 3	1.951
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.458
	CRR073311	Second white 3	0.344
	CRR073312	Silver flowering 1	1.225
	CRR073313	Silver flowering 2	1.318
	CRR073314	Silver flowering 3	1.902
	CRR073315	Gold flowering 1	0.599
	CRR073316	Gold flowering 2	0.249
	CRR073317	Gold flowering 3	0.655
	CRR073318	Tawny withering 1	3.361
	CRR073319	Tawny withering 2	3.921
	CRR073320	Tawny withering 3	1.908