Detail information of GWHGAAZE010658


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011090165.10PREDICTED: serine--glyoxylate aminotransferase [Sesamum indicum]
Swissprottr|Q56YA5|SGAT_ARATH0Serine--glyoxylate aminotransferase
trEMBLtr|B9HP22|B9HP22_POPTR0Aminotransferase 2 family protein {ECO:0000313|EMBL:EEE87326.1}
TAIR10AT2G13360.20alanine:glyoxylate aminotransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene1813551018139852+
GWHAAZE00000003mRNA1813551018139852+
GWHAAZE00000003exon1813551018135714+
GWHAAZE00000003exon1813661618136900+
GWHAAZE00000003exon1813757218137942+
GWHAAZE00000003exon1813844218138479+
GWHAAZE00000003exon1813856418138774+
GWHAAZE00000003exon1813971518139852+
GWHAAZE00000003CDS1813551018135714+
GWHAAZE00000003CDS1813661618136900+
GWHAAZE00000003CDS1813757218137942+
GWHAAZE00000003CDS1813844218138479+
GWHAAZE00000003CDS1813856418138774+
GWHAAZE00000003CDS1813971518139852+
Transcript Sequence

Network for GWHGAAZE010658

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00266.20Aminotran_5122876.40E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00830AGXT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Alanine, aspartate and glutamate metabolismmap00250
Glycine, serine and threonine metabolismmap00260
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf50.421
SRR3591706second leaf279.697
SRR3591707mature leaf588.911
SRR3591708Shoot apex76.609
SRR3591709Stem92.975
SRR3591710White floral bud5.871
SRR3591711White flower16.384
SRR3591712Green floral bud6.985
SRR3591713Yellow flower18.612
SRP173429 SRR8316895Juvenile bud stage 41.622
SRR8316896Juvenile bud stage 43.791
SRR8316897Juvenile bud stage 29.718
SRR8316894Third green stage 13.989
SRR8316900Third green stage 32.087
SRR8316901Third green stage 30.468
SRR8316898Complete white stage 14.298
SRR8316899Complete white stage 39.008
SRR8316903Complete white stage 18.048
SRR8316902Silver flowering stage3.707
SRR8316904Silver flowering stage8.025
SRR8316905Silver flowering stage3.510
SRR8316906Gold flowering stage 10.826
SRR8316907Gold flowering stage 10.886
SRR8316908Gold flowering stage 10.403
SRP132670SRR6706286Control55.650
SRR6706287Light intensity 50%36.349
SRR6706288Light intensity 20%38.697
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.759
CNS0095593Slightly white alabastrum(diploid) 212.150
CNS0095594Slightly white alabastrum(diploid) 319.598
CNS0095595Whole white alabastrum(diploid) 211.827
CNS0095596Whole white alabastrum(diploid) 314.382
CNS0095597Whole white alabastrum(diploid) 411.755
CNS0095598Silvery flower (diploied) 161.102
CNS0095599Silvery flower (diploied) 256.648
CNS0095600Silvery flower (diploied) 372.417
CNS0095601Golden flower (diploid) 175.977
CNS0095602Golden flower (diploid) 287.915
CNS0095603Golden flower (diploid) 383.310
CNS0095604Slightly white alabastrum(tetraploid) 13.110
CNS0095605Slightly white alabastrum(tetraploid) 23.382
CNS0095606Slightly white alabastrum(tetraploid) 35.499
CNS0095607Whole white alabastrum(tetraploid) 11.969
CNS0095608Whole white alabastrum(tetraploid) 22.612
CNS0095609Whole white alabastrum(tetraploid) 33.882
CNS0095610Silvery flower (tetraploid) 111.195
CNS0095611Silvery flower (tetraploid) 231.048
CNS0095612Silvery flower (tetraploid) 313.694
CNS0095613Golden flower (tetraploid) 115.217
CNS0095614Golden flower (tetraploid) 223.760
CNS0095615Golden flower (tetraploid) 314.976
CRA001975CRR073297Stem 184.401
CRR073298Stem 260.672
CRR073299Stem 395.645
CRR073300Leaf 115.115
CRR073301Leaf 223.461
CRR073302Leaf 317.407
CRR073303Juvenile bud 124.112
CRR073304Juvenile bud 217.698
CRR073305Juvenile bud 334.038
CRR073306Third green 13.331
CRR073307Third green 24.450
CRR073308Third green 34.502
CRR073309Second white 114.521
CRR073310Second white 29.271
CRR073311Second white 34.281
CRR073312Silver flowering 17.921
CRR073313Silver flowering 28.328
CRR073314Silver flowering 311.431
CRR073315Gold flowering 11007.063
CRR073316Gold flowering 21181.129
CRR073317Gold flowering 31244.592
CRR073318Tawny withering 195.407
CRR073319Tawny withering 275.652
CRR073320Tawny withering 354.044