Gene detail

Detail information of GWHGAAZE010623

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10828.1	3.1867E-136	unnamed protein product [Coffea canephora]
Swissprot	tr\|P27054\|CHI4_PHAVU	3E-114	Endochitinase PR4 (Precursor)
trEMBL	tr\|A0A068UT78\|A0A068UT78_COFCA	1E-136	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10828.1}
TAIR10	AT3G54420.1	1E-103	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15773621	15775118	-
GWHAAZE00000003	mRNA	15773621	15775118	-
GWHAAZE00000003	exon	15774691	15775118	-
GWHAAZE00000003	exon	15773621	15774314	-
GWHAAZE00000003	CDS	15774691	15775118	-
GWHAAZE00000003	CDS	15773903	15774314	-
GWHAAZE00000003	three_prime_UTR	15773621	15773902	-

Transcript Sequence
>GWHTAAZE010635 ATGTCACCTATCACCATGAGACCAAATTTCTTAGCAAAAGTTATTATTCTTTCCGGAATACTCGCTGGAGCCTTGCCAGAGTTTATTGCCGGCCAGAACTGCGGATGTGCAGCGGACCTATGCTGTAGCCAATACGGGTATTGTGGCACTACCAGTGATTACTGTGGTGCAGGGTGTCAGGGTGGCCCTTGTTTTGCACCACCGCCTACCAATGGTGTTTCCGTGGCAAGTATTGTTACTGATGCATTCTTTAATGGGATAATTGATCAAGCGGCAGATGGTTGTGCCGGAAAGGGCTTTTTCACACGGGCTGCATTTCTTGAGGCCCTTAACTTTTATACGCAATTTGGTAGAGTTGGGTCTGAGGATGATTCTAAGCGAGAGATCGCAGCTTTTTTTGGACATGTCATGCACGAGACTGGACGTAAACTTTTGCTACATAGAAGAGATAGATGGCCCATCAAAGACTATTGCGAAGAAGGAAACACACAGTATCCATGCGCACCGAACAAGGGCTATTATGGCCGCGGTCCACTTCAGCTCTCATGGAACTACAATTACGGTCCAGCCGGAAGTAGCATCGGCTTTGATGGACTAAACAACCCCGAAATTGTGGCATCTGACCCAGTTGTGTCATTTCGGGCTGCCTTGTGGTATTGGATGAACAGGATGCACTCTATCATTACTTCTGGCCAAGGGTTCGGGCCTACCATCCGTGCCATTAATGGTCAACTTGAGTGCGACGGTGCAAACCCTAATACTGTTACTGCTCGAGTTCAGTATTACACTGAGTTGTGTAATCAACTTGGTGTTTCTCCCGGAGATAATCTTCGATGCTAGGACTGAAAGCACTTTGACATTGTCCCGCAAAGTACAAAGAAAAACGCGAGGGATAAAAAGGATAAGAAAAAGAAAGTGGTACATGTTATTGTATTTGTTTTATTTATTTCTATTTTCACCCTTTTGTCTTTGTAATTTTTTCAGAAATCCAAACATTTGCAATGATGTATTGTGAAACATGATTTGGAAGAGAAAAATATAAAAAGAATAGATAGAAGTAAAAGGTAGTCAATTATGTTTATTACCTATAATTAATAAATTCAATGGTTTTGGATATATAGA

Network for GWHGAAZE010623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00187.20	Chitin_bind_1	33	64	3.20E-08
PF00182.20	Glyco_hydro_19	78	223	1.10E-37
PF00182.20	Glyco_hydro_19	233	279	3.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004568	molecular_function	chitinase activity
GO:0008061	molecular_function	chitin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.896
	SRR3591706	second leaf	0.474
	SRR3591707	mature leaf	0.276
	SRR3591708	Shoot apex	0.296
	SRR3591709	Stem	6.053
	SRR3591710	White floral bud	4.236
	SRR3591711	White flower	5.575
	SRR3591712	Green floral bud	3.358
	SRR3591713	Yellow flower	7.214
SRP173429	SRR8316895	Juvenile bud stage	9.642
	SRR8316896	Juvenile bud stage	9.346
	SRR8316897	Juvenile bud stage	8.734
	SRR8316894	Third green stage	3.876
	SRR8316900	Third green stage	2.505
	SRR8316901	Third green stage	3.442
	SRR8316898	Complete white stage	6.794
	SRR8316899	Complete white stage	9.936
	SRR8316903	Complete white stage	4.695
	SRR8316902	Silver flowering stage	21.856
	SRR8316904	Silver flowering stage	21.156
	SRR8316905	Silver flowering stage	10.833
	SRR8316906	Gold flowering stage	74.322
	SRR8316907	Gold flowering stage	46.142
	SRR8316908	Gold flowering stage	73.301
SRP132670	SRR6706286	Control	5.828
	SRR6706287	Light intensity 50%	8.743
	SRR6706288	Light intensity 20%	3.283
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.500
	CNS0095593	Slightly white alabastrum(diploid) 2	11.695
	CNS0095594	Slightly white alabastrum(diploid) 3	13.793
	CNS0095595	Whole white alabastrum(diploid) 2	5.150
	CNS0095596	Whole white alabastrum(diploid) 3	1.105
	CNS0095597	Whole white alabastrum(diploid) 4	3.011
	CNS0095598	Silvery flower (diploied) 1	18.244
	CNS0095599	Silvery flower (diploied) 2	8.708
	CNS0095600	Silvery flower (diploied) 3	12.824
	CNS0095601	Golden flower (diploid) 1	20.378
	CNS0095602	Golden flower (diploid) 2	16.329
	CNS0095603	Golden flower (diploid) 3	15.144
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.118
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	3.439
	CNS0095611	Silvery flower (tetraploid) 2	0.579
	CNS0095612	Silvery flower (tetraploid) 3	2.427
	CNS0095613	Golden flower (tetraploid) 1	4.338
	CNS0095614	Golden flower (tetraploid) 2	13.797
	CNS0095615	Golden flower (tetraploid) 3	1.031
CRA001975	CRR073297	Stem 1	2.951
	CRR073298	Stem 2	1.261
	CRR073299	Stem 3	1.489
	CRR073300	Leaf 1	1.466
	CRR073301	Leaf 2	2.127
	CRR073302	Leaf 3	0.830
	CRR073303	Juvenile bud 1	0.676
	CRR073304	Juvenile bud 2	0.373
	CRR073305	Juvenile bud 3	1.475
	CRR073306	Third green 1	1.740
	CRR073307	Third green 2	0.984
	CRR073308	Third green 3	1.046
	CRR073309	Second white 1	4.441
	CRR073310	Second white 2	3.158
	CRR073311	Second white 3	4.396
	CRR073312	Silver flowering 1	15.296
	CRR073313	Silver flowering 2	10.688
	CRR073314	Silver flowering 3	11.717
	CRR073315	Gold flowering 1	0.211
	CRR073316	Gold flowering 2	1.027
	CRR073317	Gold flowering 3	3.516
	CRR073318	Tawny withering 1	3.825
	CRR073319	Tawny withering 2	35.562
	CRR073320	Tawny withering 3	2.433