Detail information of GWHGAAZE010619


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAET25429.13.0413E-127class IV chitinase [Actinidia chinensis]
Swissprottr|Q6K8R2|CHI6_ORYSJ6E-114Chitinase 6 (Precursor)
trEMBLtr|G8IEM3|G8IEM3_ACTCH1E-127Class IV chitinase {ECO:0000313|EMBL:AET25429.1}
TAIR10AT3G54420.12E-92homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene1574991415751557+
GWHAAZE00000003mRNA1574991415751557+
GWHAAZE00000003exon1574991415750322+
GWHAAZE00000003exon1575114215751557+
GWHAAZE00000003CDS1574991415750322+
GWHAAZE00000003CDS1575114215751557+
Transcript Sequence

Network for GWHGAAZE010619

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00187.20Chitin_bind_131627.80E-07
PF00182.20Glyco_hydro_19742175.60E-39
PF00182.20Glyco_hydro_192262745.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01183E3.2.1.14 Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0006032biological_processchitin catabolic process
GO:0016998biological_processcell wall macromolecule catabolic process
GO:0005975biological_processcarbohydrate metabolic process
GO:0004568molecular_functionchitinase activity
GO:0008061molecular_functionchitin binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE010619.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200220240Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.350
SRR3591706second leaf80.897
SRR3591707mature leaf146.479
SRR3591708Shoot apex56.252
SRR3591709Stem63.488
SRR3591710White floral bud107.200
SRR3591711White flower148.281
SRR3591712Green floral bud105.886
SRR3591713Yellow flower100.626
SRP173429 SRR8316895Juvenile bud stage 64.028
SRR8316896Juvenile bud stage 75.897
SRR8316897Juvenile bud stage 29.040
SRR8316894Third green stage 18.093
SRR8316900Third green stage 34.997
SRR8316901Third green stage 37.506
SRR8316898Complete white stage 48.211
SRR8316899Complete white stage 86.389
SRR8316903Complete white stage 36.638
SRR8316902Silver flowering stage49.173
SRR8316904Silver flowering stage44.896
SRR8316905Silver flowering stage30.124
SRR8316906Gold flowering stage 135.192
SRR8316907Gold flowering stage 137.231
SRR8316908Gold flowering stage 121.934
SRP132670SRR6706286Control194.518
SRR6706287Light intensity 50%129.386
SRR6706288Light intensity 20%95.099
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.377
CNS0095593Slightly white alabastrum(diploid) 239.614
CNS0095594Slightly white alabastrum(diploid) 352.010
CNS0095595Whole white alabastrum(diploid) 222.716
CNS0095596Whole white alabastrum(diploid) 38.817
CNS0095597Whole white alabastrum(diploid) 415.357
CNS0095598Silvery flower (diploied) 168.582
CNS0095599Silvery flower (diploied) 254.090
CNS0095600Silvery flower (diploied) 338.669
CNS0095601Golden flower (diploid) 1102.402
CNS0095602Golden flower (diploid) 255.998
CNS0095603Golden flower (diploid) 355.587
CNS0095604Slightly white alabastrum(tetraploid) 114.878
CNS0095605Slightly white alabastrum(tetraploid) 219.635
CNS0095606Slightly white alabastrum(tetraploid) 330.826
CNS0095607Whole white alabastrum(tetraploid) 114.469
CNS0095608Whole white alabastrum(tetraploid) 28.877
CNS0095609Whole white alabastrum(tetraploid) 320.347
CNS0095610Silvery flower (tetraploid) 143.660
CNS0095611Silvery flower (tetraploid) 211.395
CNS0095612Silvery flower (tetraploid) 342.039
CNS0095613Golden flower (tetraploid) 141.248
CNS0095614Golden flower (tetraploid) 276.229
CNS0095615Golden flower (tetraploid) 39.371
CRA001975CRR073297Stem 164.977
CRR073298Stem 256.291
CRR073299Stem 326.332
CRR073300Leaf 122.116
CRR073301Leaf 255.025
CRR073302Leaf 336.709
CRR073303Juvenile bud 17.713
CRR073304Juvenile bud 211.123
CRR073305Juvenile bud 319.143
CRR073306Third green 144.200
CRR073307Third green 226.814
CRR073308Third green 333.806
CRR073309Second white 146.275
CRR073310Second white 232.413
CRR073311Second white 317.654
CRR073312Silver flowering 110.311
CRR073313Silver flowering 218.709
CRR073314Silver flowering 310.983
CRR073315Gold flowering 187.634
CRR073316Gold flowering 2105.627
CRR073317Gold flowering 3215.125
CRR073318Tawny withering 122.118
CRR073319Tawny withering 222.873
CRR073320Tawny withering 36.904