Gene detail

Detail information of GWHGAAZE010617

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10828.1	4.8079E-101	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6K8R2\|CHI6_ORYSJ	2E-90	Chitinase 6 (Precursor)
trEMBL	tr\|A0A068UT78\|A0A068UT78_COFCA	2E-101	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10828.1}
TAIR10	AT3G54420.1	2E-73	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15685056	15686701	+
GWHAAZE00000003	mRNA	15685056	15686701	+
GWHAAZE00000003	exon	15685056	15685371	+
GWHAAZE00000003	exon	15686286	15686701	+
GWHAAZE00000003	CDS	15685056	15685371	+
GWHAAZE00000003	CDS	15686286	15686701	+

Transcript Sequence
>GWHTAAZE010629 ATGAGATACAATCATAATTTGCTAGCCAAAATCATCATTTTGGCCGGAGTTCTCGCGGTAGCCTTGCCAGAGCTAGTTCTCGGTCAAGGTCAATGCGGATGCGCCTCGACTGACTGCTGCAGCCAGTTCGGATTTTGCGGGCTAGGACCGGATTTCTGTGGACCAGGGTGTCAAAGTGGGCCTTGTGACCCGCCCAACGATGTGTCGGTCCCAAGTATTGTGACGGACGCATTTTTCAGTGGGATTGTTAATCAAGCTGCTGCGAGCTGTGTTGGAAGGGGATTTTACACGAGATCAGCATTTCTTGAGGCTCTTGGTTTTTGCTTCATAGAAGAGACAGATGGTCCCAGTAGAGATTACTGTAACGAGACGAATACGGAGTATCCATGTGCACCCAATAAGGGCTACTATGGTCGAGGTCCTCTTCAGCTCTCATGGAACTACAATTACGGACCAGCCGGAGAGAGCAATGGTTTTGACGGACTAAACAACCCCGAAATCGTGGCCACCAACGCCGTTGTCTCCTTCAGAGCAGCGTTGTGGTATTGGATGAGAAGCGTTCACTCTATCATAACTTCTGGACAAGGGTTTGGCGCAACCATTAGAGCTATTAACGGACAACTTGAATGCAATAATGGTCCAAACTCTGGTGCTGTTGCCAGTCGCGTTGATTATTACACAAGGTTTTGTAGCCAACTTAGTGTTTCGCCTGGCGAAAATCTACGATGTTAA

Network for GWHGAAZE010617

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00187.20	Chitin_bind_1	31	62	2.10E-06
PF00182.20	Glyco_hydro_19	104	243	8.20E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.916
	SRR3591706	second leaf	4.709
	SRR3591707	mature leaf	10.092
	SRR3591708	Shoot apex	2.994
	SRR3591709	Stem	19.963
	SRR3591710	White floral bud	30.973
	SRR3591711	White flower	111.372
	SRR3591712	Green floral bud	19.745
	SRR3591713	Yellow flower	172.122
SRP173429	SRR8316895	Juvenile bud stage	12.077
	SRR8316896	Juvenile bud stage	18.836
	SRR8316897	Juvenile bud stage	6.733
	SRR8316894	Third green stage	8.190
	SRR8316900	Third green stage	12.734
	SRR8316901	Third green stage	17.578
	SRR8316898	Complete white stage	52.693
	SRR8316899	Complete white stage	32.206
	SRR8316903	Complete white stage	23.878
	SRR8316902	Silver flowering stage	91.616
	SRR8316904	Silver flowering stage	101.099
	SRR8316905	Silver flowering stage	54.561
	SRR8316906	Gold flowering stage	421.886
	SRR8316907	Gold flowering stage	262.311
	SRR8316908	Gold flowering stage	775.853
SRP132670	SRR6706286	Control	44.093
	SRR6706287	Light intensity 50%	32.937
	SRR6706288	Light intensity 20%	21.258
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.809
	CNS0095593	Slightly white alabastrum(diploid) 2	10.484
	CNS0095594	Slightly white alabastrum(diploid) 3	30.331
	CNS0095595	Whole white alabastrum(diploid) 2	5.167
	CNS0095596	Whole white alabastrum(diploid) 3	2.959
	CNS0095597	Whole white alabastrum(diploid) 4	5.490
	CNS0095598	Silvery flower (diploied) 1	24.709
	CNS0095599	Silvery flower (diploied) 2	10.669
	CNS0095600	Silvery flower (diploied) 3	66.881
	CNS0095601	Golden flower (diploid) 1	48.973
	CNS0095602	Golden flower (diploid) 2	94.474
	CNS0095603	Golden flower (diploid) 3	86.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.606
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.383
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.579
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.605
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.458
	CNS0095610	Silvery flower (tetraploid) 1	34.071
	CNS0095611	Silvery flower (tetraploid) 2	2.960
	CNS0095612	Silvery flower (tetraploid) 3	27.718
	CNS0095613	Golden flower (tetraploid) 1	76.851
	CNS0095614	Golden flower (tetraploid) 2	115.720
	CNS0095615	Golden flower (tetraploid) 3	7.176
CRA001975	CRR073297	Stem 1	6.735
	CRR073298	Stem 2	7.564
	CRR073299	Stem 3	2.709
	CRR073300	Leaf 1	5.429
	CRR073301	Leaf 2	8.950
	CRR073302	Leaf 3	8.672
	CRR073303	Juvenile bud 1	6.595
	CRR073304	Juvenile bud 2	2.538
	CRR073305	Juvenile bud 3	4.979
	CRR073306	Third green 1	24.113
	CRR073307	Third green 2	18.409
	CRR073308	Third green 3	20.097
	CRR073309	Second white 1	169.615
	CRR073310	Second white 2	94.858
	CRR073311	Second white 3	61.335
	CRR073312	Silver flowering 1	340.471
	CRR073313	Silver flowering 2	441.170
	CRR073314	Silver flowering 3	443.471
	CRR073315	Gold flowering 1	4.358
	CRR073316	Gold flowering 2	4.781
	CRR073317	Gold flowering 3	19.128
	CRR073318	Tawny withering 1	53.682
	CRR073319	Tawny withering 2	151.696
	CRR073320	Tawny withering 3	13.830