Gene detail

Detail information of GWHGAAZE010616

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10828.1	7.9615E-135	unnamed protein product [Coffea canephora]
Swissprot	tr\|P27054\|CHI4_PHAVU	2E-111	Endochitinase PR4 (Precursor)
trEMBL	tr\|A0A068UT78\|A0A068UT78_COFCA	3E-135	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10828.1}
TAIR10	AT3G54420.1	9E-92	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15666116	15667287	+
GWHAAZE00000003	mRNA	15666116	15667287	+
GWHAAZE00000003	exon	15666116	15666548	+
GWHAAZE00000003	exon	15666875	15667287	+
GWHAAZE00000003	CDS	15666116	15666548	+
GWHAAZE00000003	CDS	15666875	15667287	+

Transcript Sequence
>GWHTAAZE010628 ATGTCGCCCATTACCAAGAAAATAAATTCACTAACAAAAATCATCCTTGTTGCCGGAATCCTCGCCGGAGTTCTGCCGGAGCTGATAGTGGGTCAAAACTGCGGCTGTGCCCCGGGCCTTTGTTGTAGCCAATTTGGTTTTTGCGGGACTGGTGAGGAGTATTGTGGGCAAAATTGCCGAGAAGGGCCATGTACGGGGGCAGGCGGAACCCCGACGACTCCAAGTGGAGCATCGGTTGCGGATATAGTGACAGATAGTTTTTTTAACGGGATTGTTAACAGTGATGCGAGTTGTGCAGGGAGGGGTTTTTATACTAGAGCAGCGTTTCTTGAGGCTGTTAACTCGTTTCCTGAATTTGGAAGGACTGGCTCTGCTGATGATTCTAGGCGCGAGATCGCAGCTTTCTTCGCTCATGCTAGCCATGAGACTTCACGCTTTTGCTTCATAGAAGAGATAAATGGCGCCTCTCAAGACTATTGTGATGAAAACAACACGCAATATCCATGCGTACAAAACGAGAACTATTACGGCCGAGGTCCCCTTCAACTCACATGGAACTACAACTACGGAGCTGCCGGACAAAGTGTGGGTTTTGATGGACTAAACAACCCCGAAATCGTGGCCACTAATAATGTCATATCATTTAGGGCATCCTTGTGGTTCTGGATGACAAACGTTCATTCTATCATAACTTCTGGCCGAGGTTTTGGGGAAACGATTCGCGCAATTAACGGTCAACTTGAGTGCAACGGTGCAAACCCTGATACTGTCACTAGCCGCGTTAATTATTACACAAACTATTGTTCCCAACTTGGTGTTGCACCCGGTGATAATCTTAGGTGTTAA

Network for GWHGAAZE010616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	82	281	1.10E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004568	molecular_function	chitinase activity
GO:0008061	molecular_function	chitin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.842
	SRR3591706	second leaf	0.076
	SRR3591707	mature leaf	2.090
	SRR3591708	Shoot apex	0.255
	SRR3591709	Stem	0.318
	SRR3591710	White floral bud	33.477
	SRR3591711	White flower	1405.299
	SRR3591712	Green floral bud	0.662
	SRR3591713	Yellow flower	2226.166
SRP173429	SRR8316895	Juvenile bud stage	1.339
	SRR8316896	Juvenile bud stage	13.356
	SRR8316897	Juvenile bud stage	1.904
	SRR8316894	Third green stage	1.989
	SRR8316900	Third green stage	4.577
	SRR8316901	Third green stage	6.093
	SRR8316898	Complete white stage	58.609
	SRR8316899	Complete white stage	3.351
	SRR8316903	Complete white stage	37.503
	SRR8316902	Silver flowering stage	651.751
	SRR8316904	Silver flowering stage	435.490
	SRR8316905	Silver flowering stage	158.395
	SRR8316906	Gold flowering stage	2294.969
	SRR8316907	Gold flowering stage	2051.690
	SRR8316908	Gold flowering stage	2881.853
SRP132670	SRR6706286	Control	63.590
	SRR6706287	Light intensity 50%	15.101
	SRR6706288	Light intensity 20%	3.857
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	127.713
	CNS0095593	Slightly white alabastrum(diploid) 2	2.503
	CNS0095594	Slightly white alabastrum(diploid) 3	5.669
	CNS0095595	Whole white alabastrum(diploid) 2	1.942
	CNS0095596	Whole white alabastrum(diploid) 3	1.365
	CNS0095597	Whole white alabastrum(diploid) 4	4.530
	CNS0095598	Silvery flower (diploied) 1	48.856
	CNS0095599	Silvery flower (diploied) 2	89.130
	CNS0095600	Silvery flower (diploied) 3	876.712
	CNS0095601	Golden flower (diploid) 1	221.672
	CNS0095602	Golden flower (diploid) 2	1777.652
	CNS0095603	Golden flower (diploid) 3	1718.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.866
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.708
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.556
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.507
	CNS0095610	Silvery flower (tetraploid) 1	1189.676
	CNS0095611	Silvery flower (tetraploid) 2	624.971
	CNS0095612	Silvery flower (tetraploid) 3	549.460
	CNS0095613	Golden flower (tetraploid) 1	850.599
	CNS0095614	Golden flower (tetraploid) 2	1652.060
	CNS0095615	Golden flower (tetraploid) 3	275.418
CRA001975	CRR073297	Stem 1	1.167
	CRR073298	Stem 2	1.069
	CRR073299	Stem 3	1.115
	CRR073300	Leaf 1	1.539
	CRR073301	Leaf 2	1.385
	CRR073302	Leaf 3	3.579
	CRR073303	Juvenile bud 1	1.904
	CRR073304	Juvenile bud 2	7.423
	CRR073305	Juvenile bud 3	2.116
	CRR073306	Third green 1	49.518
	CRR073307	Third green 2	45.930
	CRR073308	Third green 3	59.015
	CRR073309	Second white 1	1459.905
	CRR073310	Second white 2	1271.200
	CRR073311	Second white 3	1530.911
	CRR073312	Silver flowering 1	2680.104
	CRR073313	Silver flowering 2	3361.344
	CRR073314	Silver flowering 3	3290.385
	CRR073315	Gold flowering 1	3.256
	CRR073316	Gold flowering 2	0.736
	CRR073317	Gold flowering 3	5.095
	CRR073318	Tawny withering 1	269.353
	CRR073319	Tawny withering 2	214.809
	CRR073320	Tawny withering 3	27.363