Gene detail

Detail information of GWHGAAZE010438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006371546.1	6.58195E-40	hypothetical protein POPTR_0019s13040g [Populus trichocarpa]
Swissprot	tr\|P93779\|RL5_SOLME	2E-39	60S ribosomal protein L5 (Fragment)
trEMBL	tr\|A9PFA8\|A9PFA8_POPTR	2E-40	Uncharacterized protein {ECO:0000313\|EMBL:ERP49343.1}
TAIR10	AT5G39740.2	3E-27	ribosomal protein L5 B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	7321120	7325061	-
GWHAAZE00000003	mRNA	7321120	7325061	-
GWHAAZE00000003	exon	7324905	7325061	-
GWHAAZE00000003	exon	7322886	7323199	-
GWHAAZE00000003	exon	7322100	7322171	-
GWHAAZE00000003	exon	7321815	7321936	-
GWHAAZE00000003	exon	7321120	7321658	-
GWHAAZE00000003	CDS	7324905	7325061	-
GWHAAZE00000003	CDS	7322886	7323199	-
GWHAAZE00000003	CDS	7322100	7322171	-
GWHAAZE00000003	CDS	7321815	7321936	-
GWHAAZE00000003	CDS	7321541	7321658	-
GWHAAZE00000003	three_prime_UTR	7321120	7321540	-

Transcript Sequence
>GWHTAAZE010450 ATGGCGACAGTAGAGATCGAGACGACGAAGGCGAAGCAAGGGGAGGGACTGAGGCAATATTATCTTCAACACATCCATGATCTTCAGCTTCAAGTTCGACGGAAGACTCACAATCTCAATCGCCTCGAAGCTAAGCGTAATGATCTCAATTCTAGAGGGTTAGTTGCACTCTCTTTTGGGGTTTGGATGTCACACCCAACCCGGTGTGTATTTGACCTGTCATCTGTTACTTCGGCCTTCTTGAAACCGGAAAAGGGTGGTGCCGTAACAGTAGCTATAAGTTTTCAAGGATTTTTTGAAAACCCAACAAAATCGACCGTGCAGGTAGGAGAGGTACGGTTTGAGCTCATCTGCTATCATGCAAAATTGGCTTCCATAAAAGCCGATGGTCTATTTCTGGTGCCAGCTACAGACAAAAAAATACTTGTTCCTCGAACTTTGAGGGAAGAAAATGTTTCTCTTTTGGGAAAGGACTCCAAGAAGCTTGATGCCGAGGTTCACCGCAAATATGTTTATGGCGGCCATGTTGCCGCGTATATGAAGACTTTAATGGAATATAAGCCAGAGAAGTACCAACGTCACTTCTTTTTGTACATCAAGAAAGGAATTCGTGCAAATCCTTCTGCTAAGACGTTTGAGAAAAAGCCACCTACGAAGCACAAGTGGTACAACTTGAAGAAGCTGACTTACGAGGAAAGGAAGGCCAAGCTAATTGAGCGCTTGAACGCTCTCAATGCTGCTGGAAGAATTGCCGACGACAACAATGATGAAGACGACGATTGAACATAAAAAAATAATAGTACCATTGTGGGATCCAAGCAGATATATAGAGCTAGAGTTGGTTTTTTCTTCGGAAGCCACGATGTGTTTGCAGTTTGATTTGAAGCTAATAAATTATTGTTTAATTTTCGCTTTAGTTTTTCGGCAGTTATTTTGGCAGGTGGGAGTGATTTTTTGGCTAGTTTTGTTTTAAGTAACATAGATACTACATTCTTTTTTGATTGGCATGAAAGGAGATTTCATTTTTATTTTATTTTTTTCATCTGAATGTGGCTTTTGTTCAATTAATCAAACACAGCCTTAGTTGTGATCAAACTTCATTCTGGGACAAAATAGTGGTCCCAAAAATTGGGTTCCCCCTTAAATAAATTATGTAAGTTGCCCTAATAATTATCTTTTTCTATGTATGTTTTGTTTGTGTAAA

Network for GWHGAAZE010438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14204.7	Ribosomal_L18_c	164	204	1.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02932	RP-L5e, RPL5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.020
	SRR3591706	second leaf	1.365
	SRR3591707	mature leaf	0.258
	SRR3591708	Shoot apex	0.970
	SRR3591709	Stem	5.618
	SRR3591710	White floral bud	0.919
	SRR3591711	White flower	0.799
	SRR3591712	Green floral bud	1.301
	SRR3591713	Yellow flower	0.218
SRP173429	SRR8316895	Juvenile bud stage	4.592
	SRR8316896	Juvenile bud stage	3.462
	SRR8316897	Juvenile bud stage	0.800
	SRR8316894	Third green stage	1.112
	SRR8316900	Third green stage	1.232
	SRR8316901	Third green stage	1.401
	SRR8316898	Complete white stage	0.195
	SRR8316899	Complete white stage	1.582
	SRR8316903	Complete white stage	1.003
	SRR8316902	Silver flowering stage	0.284
	SRR8316904	Silver flowering stage	0.010
	SRR8316905	Silver flowering stage	0.005
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.242
	SRR6706287	Light intensity 50%	0.186
	SRR6706288	Light intensity 20%	0.191
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.758
	CNS0095593	Slightly white alabastrum(diploid) 2	2.273
	CNS0095594	Slightly white alabastrum(diploid) 3	10.801
	CNS0095595	Whole white alabastrum(diploid) 2	3.585
	CNS0095596	Whole white alabastrum(diploid) 3	1.376
	CNS0095597	Whole white alabastrum(diploid) 4	1.464
	CNS0095598	Silvery flower (diploied) 1	3.623
	CNS0095599	Silvery flower (diploied) 2	4.307
	CNS0095600	Silvery flower (diploied) 3	1.459
	CNS0095601	Golden flower (diploid) 1	5.491
	CNS0095602	Golden flower (diploid) 2	0.944
	CNS0095603	Golden flower (diploid) 3	1.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.884
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.831
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.142
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.417
	CNS0095610	Silvery flower (tetraploid) 1	0.068
	CNS0095611	Silvery flower (tetraploid) 2	0.842
	CNS0095612	Silvery flower (tetraploid) 3	0.217
	CNS0095613	Golden flower (tetraploid) 1	0.145
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	2.709
	CRR073298	Stem 2	0.259
	CRR073299	Stem 3	0.056
	CRR073300	Leaf 1	0.402
	CRR073301	Leaf 2	0.224
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.043
	CRR073304	Juvenile bud 2	0.010
	CRR073305	Juvenile bud 3	0.012
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.007
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.018
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.015
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.008
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.123
	CRR073319	Tawny withering 2	0.558
	CRR073320	Tawny withering 3	0.334