Detail information of GWHGAAZE010434


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011083180.14.11655E-49PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Sesamum indicum]
Swissprottr|Q9LX54|FBL62_ARATH2E-36Putative F-box/LRR-repeat protein At3g59170
trEMBLtr|A5BLF6|A5BLF6_VITVI9E-49Putative uncharacterized protein {ECO:0000313|EMBL:CAN74740.1}
TAIR10AT3G59170.11E-33F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene67005176703171-
GWHAAZE00000003mRNA67005176703171-
GWHAAZE00000003exon67021376703171-
GWHAAZE00000003exon67018686702020-
GWHAAZE00000003exon67005176701014-
GWHAAZE00000003CDS67021376703171-
GWHAAZE00000003CDS67018686702020-
GWHAAZE00000003CDS67006976701014-
GWHAAZE00000003three_prime_UTR67005176700696-
Transcript Sequence

Network for GWHGAAZE010434

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box30645.30E-08
PF07723.14LRR_22062285.70E-05
PF08387.11FBD4164564.10E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE010434.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011121314Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.382
SRR3591706second leaf2.045
SRR3591707mature leaf2.769
SRR3591708Shoot apex3.507
SRR3591709Stem2.889
SRR3591710White floral bud3.322
SRR3591711White flower3.917
SRR3591712Green floral bud4.580
SRR3591713Yellow flower3.686
SRP173429 SRR8316895Juvenile bud stage 0.872
SRR8316896Juvenile bud stage 1.086
SRR8316897Juvenile bud stage 1.776
SRR8316894Third green stage 0.506
SRR8316900Third green stage 1.458
SRR8316901Third green stage 0.752
SRR8316898Complete white stage 0.248
SRR8316899Complete white stage 0.345
SRR8316903Complete white stage 0.368
SRR8316902Silver flowering stage0.163
SRR8316904Silver flowering stage0.105
SRR8316905Silver flowering stage0.011
SRR8316906Gold flowering stage 0.197
SRR8316907Gold flowering stage 0.264
SRR8316908Gold flowering stage 2.916
SRP132670SRR6706286Control0.158
SRR6706287Light intensity 50%0.323
SRR6706288Light intensity 20%0.265
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.434
CNS0095593Slightly white alabastrum(diploid) 21.117
CNS0095594Slightly white alabastrum(diploid) 30.873
CNS0095595Whole white alabastrum(diploid) 20.908
CNS0095596Whole white alabastrum(diploid) 30.904
CNS0095597Whole white alabastrum(diploid) 41.665
CNS0095598Silvery flower (diploied) 10.687
CNS0095599Silvery flower (diploied) 21.133
CNS0095600Silvery flower (diploied) 30.976
CNS0095601Golden flower (diploid) 11.278
CNS0095602Golden flower (diploid) 20.978
CNS0095603Golden flower (diploid) 31.039
CNS0095604Slightly white alabastrum(tetraploid) 19.797
CNS0095605Slightly white alabastrum(tetraploid) 27.894
CNS0095606Slightly white alabastrum(tetraploid) 313.080
CNS0095607Whole white alabastrum(tetraploid) 16.083
CNS0095608Whole white alabastrum(tetraploid) 25.852
CNS0095609Whole white alabastrum(tetraploid) 38.946
CNS0095610Silvery flower (tetraploid) 110.851
CNS0095611Silvery flower (tetraploid) 211.203
CNS0095612Silvery flower (tetraploid) 37.836
CNS0095613Golden flower (tetraploid) 14.963
CNS0095614Golden flower (tetraploid) 29.582
CNS0095615Golden flower (tetraploid) 36.688
CRA001975CRR073297Stem 10.648
CRR073298Stem 20.819
CRR073299Stem 30.396
CRR073300Leaf 10.527
CRR073301Leaf 20.319
CRR073302Leaf 30.060
CRR073303Juvenile bud 10.289
CRR073304Juvenile bud 20.018
CRR073305Juvenile bud 30.078
CRR073306Third green 10.066
CRR073307Third green 20.119
CRR073308Third green 30.000
CRR073309Second white 10.070
CRR073310Second white 20.000
CRR073311Second white 30.044
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.100
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.315
CRR073317Gold flowering 30.881
CRR073318Tawny withering 10.071
CRR073319Tawny withering 20.359
CRR073320Tawny withering 30.338