Detail information of GWHGAAZE010317


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787473.16.053E-120PREDICTED: F-box protein SKIP16 [Nicotiana sylvestris]
Swissprottr|Q9LND7|SKI16_ARATH7E-96F-box protein SKIP16
trEMBLtr|A0A068U788|A0A068U788_COFCA3E-111Coffea canephora DH200=94 genomic scaffold, scaffold_10 {ECO:0000313|EMBL:CDP03478.1}
TAIR10AT1G06110.13E-79SKP1/ASK-interacting protein 16

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene33325083336852-
GWHAAZE00000003mRNA33325083336852-
GWHAAZE00000003exon33366493336852-
GWHAAZE00000003exon33325083333041-
GWHAAZE00000003CDS33366493336852-
GWHAAZE00000003CDS33325083333041-
Transcript Sequence

Network for GWHGAAZE010317

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box11470.00011
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE010317.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.259
SRR3591706second leaf17.245
SRR3591707mature leaf15.928
SRR3591708Shoot apex21.869
SRR3591709Stem32.988
SRR3591710White floral bud26.354
SRR3591711White flower36.352
SRR3591712Green floral bud33.109
SRR3591713Yellow flower21.274
SRP173429 SRR8316895Juvenile bud stage 31.432
SRR8316896Juvenile bud stage 35.257
SRR8316897Juvenile bud stage 10.484
SRR8316894Third green stage 17.711
SRR8316900Third green stage 52.269
SRR8316901Third green stage 49.952
SRR8316898Complete white stage 16.403
SRR8316899Complete white stage 55.613
SRR8316903Complete white stage 27.467
SRR8316902Silver flowering stage14.856
SRR8316904Silver flowering stage18.971
SRR8316905Silver flowering stage9.555
SRR8316906Gold flowering stage 31.758
SRR8316907Gold flowering stage 30.734
SRR8316908Gold flowering stage 17.211
SRP132670SRR6706286Control21.473
SRR6706287Light intensity 50%23.400
SRR6706288Light intensity 20%28.316
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.825
CNS0095593Slightly white alabastrum(diploid) 219.072
CNS0095594Slightly white alabastrum(diploid) 318.270
CNS0095595Whole white alabastrum(diploid) 221.174
CNS0095596Whole white alabastrum(diploid) 322.144
CNS0095597Whole white alabastrum(diploid) 418.751
CNS0095598Silvery flower (diploied) 125.843
CNS0095599Silvery flower (diploied) 224.624
CNS0095600Silvery flower (diploied) 339.367
CNS0095601Golden flower (diploid) 119.580
CNS0095602Golden flower (diploid) 236.373
CNS0095603Golden flower (diploid) 338.825
CNS0095604Slightly white alabastrum(tetraploid) 119.293
CNS0095605Slightly white alabastrum(tetraploid) 218.144
CNS0095606Slightly white alabastrum(tetraploid) 338.793
CNS0095607Whole white alabastrum(tetraploid) 112.544
CNS0095608Whole white alabastrum(tetraploid) 28.062
CNS0095609Whole white alabastrum(tetraploid) 328.915
CNS0095610Silvery flower (tetraploid) 127.040
CNS0095611Silvery flower (tetraploid) 224.503
CNS0095612Silvery flower (tetraploid) 316.367
CNS0095613Golden flower (tetraploid) 16.588
CNS0095614Golden flower (tetraploid) 215.681
CNS0095615Golden flower (tetraploid) 313.233
CRA001975CRR073297Stem 138.351
CRR073298Stem 238.516
CRR073299Stem 339.757
CRR073300Leaf 136.360
CRR073301Leaf 238.437
CRR073302Leaf 345.905
CRR073303Juvenile bud 143.990
CRR073304Juvenile bud 237.094
CRR073305Juvenile bud 346.246
CRR073306Third green 117.286
CRR073307Third green 29.435
CRR073308Third green 311.922
CRR073309Second white 122.243
CRR073310Second white 217.986
CRR073311Second white 311.450
CRR073312Silver flowering 113.463
CRR073313Silver flowering 216.704
CRR073314Silver flowering 39.499
CRR073315Gold flowering 113.287
CRR073316Gold flowering 221.278
CRR073317Gold flowering 322.505
CRR073318Tawny withering 130.205
CRR073319Tawny withering 220.671
CRR073320Tawny withering 326.354