Detail information of GWHGAAZE010212


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002886876.10H+-transporting two-sector ATPase, alpha/beta subunit, central region [Arabidopsis lyrata subsp. lyrata]
Swissprottr|Q8MBM3|ATPB_CONAR0ATP synthase subunit beta, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01347}
trEMBLtr|K4ASU4|K4ASU4_SOLLC0ATP synthase subunit beta, chloroplastic {ECO:0000313|EnsemblPlants:Solyc01g007320.2.1}
TAIR10ATCG00480.15E-152ATP synthase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene124058726124060041-
GWHAAZE00000002mRNA124058726124060041-
GWHAAZE00000002exon124058726124059075-
GWHAAZE00000002exon124059189124060041-
GWHAAZE00000002CDS124059189124060041-
GWHAAZE00000002CDS124058726124059075-
Transcript Sequence

Network for GWHGAAZE010212

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00006.26ATP-synt_ab41798.00E-50
PF02823.17ATP-synt_DE_N2753482.10E-20
PF00401.21ATP-synt_DE3533952.80E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02112ATPF1B, atpD Metabolic pathways map01100
Oxidative phosphorylationmap00190
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.255
SRR3591706second leaf0.856
SRR3591707mature leaf0.835
SRR3591708Shoot apex0.648
SRR3591709Stem0.099
SRR3591710White floral bud0.118
SRR3591711White flower0.035
SRR3591712Green floral bud0.095
SRR3591713Yellow flower0.103
SRP173429 SRR8316895Juvenile bud stage 5.017
SRR8316896Juvenile bud stage 1.902
SRR8316897Juvenile bud stage 7.309
SRR8316894Third green stage 5.507
SRR8316900Third green stage 0.773
SRR8316901Third green stage 0.714
SRR8316898Complete white stage 1.755
SRR8316899Complete white stage 0.300
SRR8316903Complete white stage 1.515
SRR8316902Silver flowering stage3.089
SRR8316904Silver flowering stage2.296
SRR8316905Silver flowering stage2.082
SRR8316906Gold flowering stage 0.224
SRR8316907Gold flowering stage 0.173
SRR8316908Gold flowering stage 0.369
SRP132670SRR6706286Control0.063
SRR6706287Light intensity 50%0.125
SRR6706288Light intensity 20%0.092
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.341
CNS0095593Slightly white alabastrum(diploid) 21.884
CNS0095594Slightly white alabastrum(diploid) 33.064
CNS0095595Whole white alabastrum(diploid) 23.098
CNS0095596Whole white alabastrum(diploid) 31.674
CNS0095597Whole white alabastrum(diploid) 43.069
CNS0095598Silvery flower (diploied) 11.423
CNS0095599Silvery flower (diploied) 20.827
CNS0095600Silvery flower (diploied) 30.573
CNS0095601Golden flower (diploid) 11.328
CNS0095602Golden flower (diploid) 20.737
CNS0095603Golden flower (diploid) 30.898
CNS0095604Slightly white alabastrum(tetraploid) 12.348
CNS0095605Slightly white alabastrum(tetraploid) 23.149
CNS0095606Slightly white alabastrum(tetraploid) 31.016
CNS0095607Whole white alabastrum(tetraploid) 12.324
CNS0095608Whole white alabastrum(tetraploid) 22.032
CNS0095609Whole white alabastrum(tetraploid) 30.944
CNS0095610Silvery flower (tetraploid) 10.380
CNS0095611Silvery flower (tetraploid) 20.544
CNS0095612Silvery flower (tetraploid) 30.415
CNS0095613Golden flower (tetraploid) 10.883
CNS0095614Golden flower (tetraploid) 20.451
CNS0095615Golden flower (tetraploid) 30.312
CRA001975CRR073297Stem 12.840
CRR073298Stem 23.646
CRR073299Stem 31.175
CRR073300Leaf 11.370
CRR073301Leaf 21.806
CRR073302Leaf 31.341
CRR073303Juvenile bud 11.149
CRR073304Juvenile bud 21.125
CRR073305Juvenile bud 32.613
CRR073306Third green 11.258
CRR073307Third green 20.793
CRR073308Third green 31.595
CRR073309Second white 11.326
CRR073310Second white 22.666
CRR073311Second white 33.988
CRR073312Silver flowering 13.292
CRR073313Silver flowering 21.103
CRR073314Silver flowering 31.178
CRR073315Gold flowering 117.378
CRR073316Gold flowering 216.585
CRR073317Gold flowering 328.342
CRR073318Tawny withering 10.852
CRR073319Tawny withering 21.553
CRR073320Tawny withering 31.200