Detail information of GWHGAAZE010206


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31191.14.021E-146RNA polymerase beta subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|P06271|RPOB_TOBAC2E-140DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}
trEMBLtr|D3WBT5|D3WBT5_LONJA1E-146DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}
TAIR10ATCG00190.12E-116RNA polymerase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene124028947124031281-
GWHAAZE00000002mRNA124028947124031281-
GWHAAZE00000002exon124028947124029215-
GWHAAZE00000002exon124029484124030001-
GWHAAZE00000002exon124030288124030423-
GWHAAZE00000002exon124030530124030664-
GWHAAZE00000002exon124030735124031281-
GWHAAZE00000002CDS124030735124031281-
GWHAAZE00000002CDS124030530124030664-
GWHAAZE00000002CDS124030288124030423-
GWHAAZE00000002CDS124029484124030001-
GWHAAZE00000002CDS124028947124029215-
Transcript Sequence

Network for GWHGAAZE010206

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04561.15RNA_pol_Rpb2_21504.40E-12
PF04565.17RNA_pol_Rpb2_31111791.00E-23
PF00562.29RNA_pol_Rpb2_62734473.70E-55
PF04560.21RNA_pol_Rpb2_74645343.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03043rpoB RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
GO:0032549molecular_functionribonucleoside binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.058
SRR3591706second leaf0.029
SRR3591707mature leaf0.055
SRR3591708Shoot apex0.270
SRR3591709Stem0.000
SRR3591710White floral bud0.038
SRR3591711White flower0.025
SRR3591712Green floral bud0.036
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.636
SRR8316896Juvenile bud stage 0.188
SRR8316897Juvenile bud stage 0.907
SRR8316894Third green stage 0.989
SRR8316900Third green stage 0.130
SRR8316901Third green stage 0.179
SRR8316898Complete white stage 0.335
SRR8316899Complete white stage 0.068
SRR8316903Complete white stage 0.241
SRR8316902Silver flowering stage0.641
SRR8316904Silver flowering stage0.445
SRR8316905Silver flowering stage0.569
SRR8316906Gold flowering stage 0.010
SRR8316907Gold flowering stage 0.046
SRR8316908Gold flowering stage 0.010
SRP132670SRR6706286Control0.015
SRR6706287Light intensity 50%0.035
SRR6706288Light intensity 20%0.047
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.489
CNS0095593Slightly white alabastrum(diploid) 20.281
CNS0095594Slightly white alabastrum(diploid) 30.463
CNS0095595Whole white alabastrum(diploid) 20.577
CNS0095596Whole white alabastrum(diploid) 30.426
CNS0095597Whole white alabastrum(diploid) 40.665
CNS0095598Silvery flower (diploied) 10.242
CNS0095599Silvery flower (diploied) 20.281
CNS0095600Silvery flower (diploied) 30.386
CNS0095601Golden flower (diploid) 10.476
CNS0095602Golden flower (diploid) 20.122
CNS0095603Golden flower (diploid) 30.197
CNS0095604Slightly white alabastrum(tetraploid) 10.497
CNS0095605Slightly white alabastrum(tetraploid) 20.266
CNS0095606Slightly white alabastrum(tetraploid) 30.134
CNS0095607Whole white alabastrum(tetraploid) 10.347
CNS0095608Whole white alabastrum(tetraploid) 20.300
CNS0095609Whole white alabastrum(tetraploid) 30.249
CNS0095610Silvery flower (tetraploid) 10.261
CNS0095611Silvery flower (tetraploid) 20.337
CNS0095612Silvery flower (tetraploid) 30.245
CNS0095613Golden flower (tetraploid) 10.499
CNS0095614Golden flower (tetraploid) 20.356
CNS0095615Golden flower (tetraploid) 30.097
CRA001975CRR073297Stem 10.488
CRR073298Stem 20.239
CRR073299Stem 30.097
CRR073300Leaf 10.287
CRR073301Leaf 20.085
CRR073302Leaf 30.064
CRR073303Juvenile bud 10.388
CRR073304Juvenile bud 20.234
CRR073305Juvenile bud 30.262
CRR073306Third green 10.424
CRR073307Third green 20.150
CRR073308Third green 30.421
CRR073309Second white 10.052
CRR073310Second white 20.829
CRR073311Second white 31.111
CRR073312Silver flowering 10.973
CRR073313Silver flowering 20.196
CRR073314Silver flowering 30.349
CRR073315Gold flowering 10.569
CRR073316Gold flowering 20.503
CRR073317Gold flowering 30.374
CRR073318Tawny withering 10.303
CRR073319Tawny withering 20.238
CRR073320Tawny withering 30.247