Detail information of GWHGAAZE010203


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31154.10RNA polymerase beta'' subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|Q68S16|RPOC2_PANGI0DNA-directed RNA polymerase subunit beta'' {ECO:0000255|HAMAP-Rule:MF_01324}
trEMBLtr|D3WBT7|D3WBT7_LONJA0DNA-directed RNA polymerase subunit beta'' {ECO:0000256|HAMAP-Rule:MF_01324}
TAIR10ATCG00170.10DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene124019853124025888-
GWHAAZE00000002mRNA124019853124025888-
GWHAAZE00000002exon124019853124020262-
GWHAAZE00000002exon124020350124020442-
GWHAAZE00000002exon124021387124021524-
GWHAAZE00000002exon124021912124022178-
GWHAAZE00000002exon124022294124022587-
GWHAAZE00000002exon124023655124025327-
GWHAAZE00000002exon124025566124025888-
GWHAAZE00000002CDS124025566124025888-
GWHAAZE00000002CDS124023655124025327-
GWHAAZE00000002CDS124022294124022587-
GWHAAZE00000002CDS124021912124022178-
GWHAAZE00000002CDS124021387124021524-
GWHAAZE00000002CDS124020350124020442-
GWHAAZE00000002CDS124019853124020262-
Transcript Sequence

Network for GWHGAAZE010203

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04998.18RNA_pol_Rpb1_51102881.10E-32
PF00318.21Ribosomal_S28719071.20E-08
PF00119.21ATP-synt_A94510571.60E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03046rpoC RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015986biological_processATP synthesis coupled proton transport
GO:0006351biological_processtranscription, DNA-templated
GO:0005840cellular_componentribosome
GO:0045263cellular_componentproton-transporting ATP synthase complex, coupling factor F(o)
GO:0003735molecular_functionstructural constituent of ribosome
GO:0015078molecular_functionproton transmembrane transporter activity
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.386
SRR3591706second leaf0.540
SRR3591707mature leaf0.981
SRR3591708Shoot apex0.594
SRR3591709Stem0.286
SRR3591710White floral bud0.213
SRR3591711White flower0.151
SRR3591712Green floral bud0.326
SRR3591713Yellow flower0.151
SRP173429 SRR8316895Juvenile bud stage 1.842
SRR8316896Juvenile bud stage 1.161
SRR8316897Juvenile bud stage 3.024
SRR8316894Third green stage 3.143
SRR8316900Third green stage 1.099
SRR8316901Third green stage 0.573
SRR8316898Complete white stage 0.627
SRR8316899Complete white stage 0.280
SRR8316903Complete white stage 0.913
SRR8316902Silver flowering stage1.169
SRR8316904Silver flowering stage1.097
SRR8316905Silver flowering stage0.956
SRR8316906Gold flowering stage 0.247
SRR8316907Gold flowering stage 0.201
SRR8316908Gold flowering stage 0.232
SRP132670SRR6706286Control0.172
SRR6706287Light intensity 50%0.149
SRR6706288Light intensity 20%0.131
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.292
CNS0095593Slightly white alabastrum(diploid) 20.843
CNS0095594Slightly white alabastrum(diploid) 30.956
CNS0095595Whole white alabastrum(diploid) 21.897
CNS0095596Whole white alabastrum(diploid) 31.527
CNS0095597Whole white alabastrum(diploid) 41.752
CNS0095598Silvery flower (diploied) 11.082
CNS0095599Silvery flower (diploied) 21.011
CNS0095600Silvery flower (diploied) 30.886
CNS0095601Golden flower (diploid) 11.158
CNS0095602Golden flower (diploid) 20.620
CNS0095603Golden flower (diploid) 30.794
CNS0095604Slightly white alabastrum(tetraploid) 11.093
CNS0095605Slightly white alabastrum(tetraploid) 21.259
CNS0095606Slightly white alabastrum(tetraploid) 30.497
CNS0095607Whole white alabastrum(tetraploid) 10.867
CNS0095608Whole white alabastrum(tetraploid) 21.288
CNS0095609Whole white alabastrum(tetraploid) 30.771
CNS0095610Silvery flower (tetraploid) 10.874
CNS0095611Silvery flower (tetraploid) 21.031
CNS0095612Silvery flower (tetraploid) 30.535
CNS0095613Golden flower (tetraploid) 10.750
CNS0095614Golden flower (tetraploid) 20.808
CNS0095615Golden flower (tetraploid) 30.679
CRA001975CRR073297Stem 10.578
CRR073298Stem 21.125
CRR073299Stem 30.259
CRR073300Leaf 10.551
CRR073301Leaf 20.507
CRR073302Leaf 30.536
CRR073303Juvenile bud 10.742
CRR073304Juvenile bud 20.580
CRR073305Juvenile bud 30.901
CRR073306Third green 10.717
CRR073307Third green 20.333
CRR073308Third green 30.456
CRR073309Second white 10.302
CRR073310Second white 21.488
CRR073311Second white 32.492
CRR073312Silver flowering 12.044
CRR073313Silver flowering 20.299
CRR073314Silver flowering 30.768
CRR073315Gold flowering 12.556
CRR073316Gold flowering 22.211
CRR073317Gold flowering 32.452
CRR073318Tawny withering 10.248
CRR073319Tawny withering 20.379
CRR073320Tawny withering 30.302