Gene detail

Detail information of GWHGAAZE010192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD31166.1	3.6144E-180	RNA polymerase beta' subunit protein (chloroplast) [Lonicera japonica]
Swissprot	tr\|A7Y3B6\|RPOC1_IPOPU	3E-165	DNA-directed RNA polymerase subunit beta' {ECO:0000255\|HAMAP-Rule:MF_01323}
trEMBL	tr\|D3WBT6\|D3WBT6_LONJA	1E-180	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}
TAIR10	ATCG00180.1	1E-129	DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123954612	123960235	+
GWHAAZE00000002	mRNA	123954612	123960235	+
GWHAAZE00000002	exon	123954612	123955398	+
GWHAAZE00000002	exon	123956496	123957067	+
GWHAAZE00000002	exon	123958123	123958303	+
GWHAAZE00000002	exon	123959445	123960235	+
GWHAAZE00000002	CDS	123954612	123955398	+
GWHAAZE00000002	CDS	123956496	123957067	+
GWHAAZE00000002	CDS	123958123	123958303	+
GWHAAZE00000002	CDS	123959445	123960235	+

Transcript Sequence
>GWHTAAZE010204 ATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTGTGTCTATTACCAGTTCTTCCTCCTGAGTTGAGACCGCTTTTTCGGACAGATAGTAGTAGGCTAGTGAGGTCGGATATTAATGAACTCTATAGACGAGTTATCTATCGGAACAATACTCTTACTGATCTATTAACAACAAGTCGATTTGCGCCGGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATTCACTTCTTGATAATGGAATAGGCGGGCAACCAACGAAGGACGGTTCTAATCAAGTTTACAAGTCGTTTTCAGATAGAATTGCAGGTAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGAGTCGATTATTCAGGGCGTTCCGTTATTGTCGTGGGCCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAACTTTTCCAGACATTTGTAATTCGTGGTCTAATTAGACAGCATCTTGCTTCGAACATACGAGTTGCCAAGAGTCAAATTCGGGAAAAAGAACCGATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCGGTATTGCTGAATAGAGCGCCCACTCTGCATAGATTAGGCATACAAGCATTTCAGCCCGTTTTAGTGGAAGGGCGTGCTATTTGTTTACATCCGTTAGTTTGTAAAGGATTCAATGCAGACTTTGACGGGGATCAAATGGCTGTTCATGTGCCTTTATCTTTAGAGGCTCAAGCAGAGGCACGGAAATGCATCTCAGGTACATCAATTAGTAGGTATGAGAGGATTAATGTCGGACCCCAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGCGAAGGGCTCTTTAACAGAATATATAATTTCTTGTTACGGAGCCCGCAAGGGGTTGTGGATACTGCTGTACGAACCTCGGATGCTGGATATCTCACGCGAAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTCGAACAGATTGTGGGACCGCCCAAGGTATTTCTGTGAGTCCTCGAAATGGGACGATGGCGGAAAGTATTTTGATCCAAACATTAATAGGTCGTGTATTAGCGGATGATATATATATGGGTCCACGATGCATTGCCGCCAGAAATCAAGATATTGGAATTGGGCTTGTCAACCGATTCATAACCTTCGAGCACAACCAATATCTATACGAACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGTCGATTATGTTATGGCCGGAGTCCTACTCATGGTGACCTGGTCGAGTTGGGAGAAGCTGTCGGTATTATTGCAGGCCAATCTATTGGAGAACCGGAACAATAGTATTATTGGGGTAGATACACAAATGACTTTAACTACAAGAAGCCGAGCAGCCGGGTTGGTACGAGTGGAGAGAAAAAAAAACAGAATTGAACTTAAAATCTTTTCTGGAGATATCCATTTTCCTGGAGAGACAGATAAGATATCCCGACATAGTGGCGTCTTGATACCACAAGGAGATACGTTAGTTACATTTATATATGAAAAATCGAGATCAGGTGATATAACGCAGGGTCTTCCAAAAGTAGAACAGGTGTTCGAAGTTCGTTCGATTGATTCAATATCGATGAATCTCGAACAGAGGGTTGAGGGTTGGAACGAATGTATAACAAGAATTCTTGGAATTCCTTGGGGATTCTTGATTGGTGCTGAGCTAACTATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAAGTTTATCGATCCCAGGGGGTGCAGATCCATAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCAAATGTTTTTTTACCCGGAGAACTAATTGGATTGTTGCGAGCGGAACGAACGGGGCGCGCTTTGGAAGAAGCGATCTGTTACCGAGCCATCTTATTGGGAATAACAAGAGCATCTCTGAATACTCAAAGTTTCATATCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTCCGGGGTCGTATCGATTGGTTGAAAGGCTTGAAAGCAAACGTTGTTCTGGGCGGAATGATACCAGTTGGTACGGGATTCAAAGGCTTAGTGCATCCTTCAAGGAAACATAACAACATTCCCTTGGAAACCAAAAAGAAGAATCTATTCGAGGGGGAAATGAGAGATATTTTGTTCCACCACAAAAATGTATTTGATTCCTGCTTTTCACAAAATTTCTATGATACACCGGAGCAATCATTTATAACATTTAATGATTCCTAA

Network for GWHGAAZE010192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04997.13	RNA_pol_Rpb1_1	7	124	6.50E-29
PF00623.21	RNA_pol_Rpb1_2	126	178	8.10E-08
PF00623.21	RNA_pol_Rpb1_2	176	265	2.50E-26
PF04998.18	RNA_pol_Rpb1_5	311	354	1.40E-11
PF04998.18	RNA_pol_Rpb1_5	581	668	1.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03046	rpoC	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.291
	SRR3591706	second leaf	0.576
	SRR3591707	mature leaf	0.777
	SRR3591708	Shoot apex	0.625
	SRR3591709	Stem	0.248
	SRR3591710	White floral bud	0.163
	SRR3591711	White flower	0.131
	SRR3591712	Green floral bud	0.322
	SRR3591713	Yellow flower	0.309
SRP173429	SRR8316895	Juvenile bud stage	1.821
	SRR8316896	Juvenile bud stage	1.412
	SRR8316897	Juvenile bud stage	2.759
	SRR8316894	Third green stage	3.495
	SRR8316900	Third green stage	1.358
	SRR8316901	Third green stage	0.614
	SRR8316898	Complete white stage	0.788
	SRR8316899	Complete white stage	0.324
	SRR8316903	Complete white stage	0.769
	SRR8316902	Silver flowering stage	1.660
	SRR8316904	Silver flowering stage	1.226
	SRR8316905	Silver flowering stage	1.267
	SRR8316906	Gold flowering stage	0.330
	SRR8316907	Gold flowering stage	0.739
	SRR8316908	Gold flowering stage	0.275
SRP132670	SRR6706286	Control	0.313
	SRR6706287	Light intensity 50%	0.318
	SRR6706288	Light intensity 20%	0.249
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.097
	CNS0095593	Slightly white alabastrum(diploid) 2	1.277
	CNS0095594	Slightly white alabastrum(diploid) 3	1.374
	CNS0095595	Whole white alabastrum(diploid) 2	1.603
	CNS0095596	Whole white alabastrum(diploid) 3	1.955
	CNS0095597	Whole white alabastrum(diploid) 4	1.606
	CNS0095598	Silvery flower (diploied) 1	1.267
	CNS0095599	Silvery flower (diploied) 2	0.960
	CNS0095600	Silvery flower (diploied) 3	0.955
	CNS0095601	Golden flower (diploid) 1	1.282
	CNS0095602	Golden flower (diploid) 2	0.686
	CNS0095603	Golden flower (diploid) 3	0.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.183
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.701
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.902
	CNS0095610	Silvery flower (tetraploid) 1	0.659
	CNS0095611	Silvery flower (tetraploid) 2	1.074
	CNS0095612	Silvery flower (tetraploid) 3	0.439
	CNS0095613	Golden flower (tetraploid) 1	0.870
	CNS0095614	Golden flower (tetraploid) 2	0.649
	CNS0095615	Golden flower (tetraploid) 3	0.601
CRA001975	CRR073297	Stem 1	1.277
	CRR073298	Stem 2	1.645
	CRR073299	Stem 3	0.476
	CRR073300	Leaf 1	0.989
	CRR073301	Leaf 2	0.724
	CRR073302	Leaf 3	0.768
	CRR073303	Juvenile bud 1	1.680
	CRR073304	Juvenile bud 2	1.186
	CRR073305	Juvenile bud 3	2.109
	CRR073306	Third green 1	1.595
	CRR073307	Third green 2	0.362
	CRR073308	Third green 3	1.355
	CRR073309	Second white 1	0.459
	CRR073310	Second white 2	2.800
	CRR073311	Second white 3	4.883
	CRR073312	Silver flowering 1	2.852
	CRR073313	Silver flowering 2	0.248
	CRR073314	Silver flowering 3	1.330
	CRR073315	Gold flowering 1	2.873
	CRR073316	Gold flowering 2	2.505
	CRR073317	Gold flowering 3	2.085
	CRR073318	Tawny withering 1	0.769
	CRR073319	Tawny withering 2	0.615
	CRR073320	Tawny withering 3	0.339