Detail information of GWHGAAZE010183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABA96140.20Ribulose bisphosphate carboxylase large chain precursor, putative [Oryza sativa Japonica Group]
Swissprottr|O63094|RBL_CAJCA5E-177Ribulose bisphosphate carboxylase large chain {ECO:0000255|HAMAP-Rule:MF_01338} (Precursor)
trEMBLtr|Q2QW49|Q2QW49_ORYSJ0Ribulose bisphosphate carboxylase large chain, putative {ECO:0000313|EMBL:ABA96140.2}
TAIR10ATCG00490.12E-127ribulose-bisphosphate carboxylases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123919124123920551-
GWHAAZE00000002mRNA123919124123920551-
GWHAAZE00000002exon123919819123920551-
GWHAAZE00000002exon123919630123919736-
GWHAAZE00000002exon123919320123919453-
GWHAAZE00000002exon123919124123919211-
GWHAAZE00000002CDS123919819123920551-
GWHAAZE00000002CDS123919630123919736-
GWHAAZE00000002CDS123919320123919453-
GWHAAZE00000002CDS123919124123919211-
Transcript Sequence

Network for GWHGAAZE010183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02788.17RuBisCO_large_N241449.40E-46
PF00016.21RuBisCO_large1542503.10E-41
PF00016.21RuBisCO_large2813276.40E-14
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01601rbcL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0015977biological_processcarbon fixation
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
GO:0000287molecular_functionmagnesium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.436
SRR3591706second leaf11.534
SRR3591707mature leaf7.199
SRR3591708Shoot apex9.713
SRR3591709Stem2.004
SRR3591710White floral bud0.725
SRR3591711White flower0.930
SRR3591712Green floral bud1.422
SRR3591713Yellow flower1.666
SRP173429 SRR8316895Juvenile bud stage 92.890
SRR8316896Juvenile bud stage 29.340
SRR8316897Juvenile bud stage 147.405
SRR8316894Third green stage 140.743
SRR8316900Third green stage 10.497
SRR8316901Third green stage 7.861
SRR8316898Complete white stage 66.658
SRR8316899Complete white stage 2.385
SRR8316903Complete white stage 42.889
SRR8316902Silver flowering stage69.218
SRR8316904Silver flowering stage58.309
SRR8316905Silver flowering stage69.823
SRR8316906Gold flowering stage 2.566
SRR8316907Gold flowering stage 1.883
SRR8316908Gold flowering stage 2.752
SRP132670SRR6706286Control4.415
SRR6706287Light intensity 50%6.988
SRR6706288Light intensity 20%5.671
CNP0000432CNS0095592Slightly white alabastrum(diploid) 144.695
CNS0095593Slightly white alabastrum(diploid) 226.373
CNS0095594Slightly white alabastrum(diploid) 340.551
CNS0095595Whole white alabastrum(diploid) 254.607
CNS0095596Whole white alabastrum(diploid) 341.604
CNS0095597Whole white alabastrum(diploid) 443.276
CNS0095598Silvery flower (diploied) 133.308
CNS0095599Silvery flower (diploied) 235.707
CNS0095600Silvery flower (diploied) 313.635
CNS0095601Golden flower (diploid) 132.652
CNS0095602Golden flower (diploid) 26.970
CNS0095603Golden flower (diploid) 312.141
CNS0095604Slightly white alabastrum(tetraploid) 147.554
CNS0095605Slightly white alabastrum(tetraploid) 251.093
CNS0095606Slightly white alabastrum(tetraploid) 310.650
CNS0095607Whole white alabastrum(tetraploid) 130.137
CNS0095608Whole white alabastrum(tetraploid) 248.380
CNS0095609Whole white alabastrum(tetraploid) 311.883
CNS0095610Silvery flower (tetraploid) 18.702
CNS0095611Silvery flower (tetraploid) 213.125
CNS0095612Silvery flower (tetraploid) 310.570
CNS0095613Golden flower (tetraploid) 126.098
CNS0095614Golden flower (tetraploid) 212.439
CNS0095615Golden flower (tetraploid) 38.406
CRA001975CRR073297Stem 145.448
CRR073298Stem 243.137
CRR073299Stem 318.917
CRR073300Leaf 115.680
CRR073301Leaf 218.025
CRR073302Leaf 323.256
CRR073303Juvenile bud 143.551
CRR073304Juvenile bud 236.380
CRR073305Juvenile bud 361.785
CRR073306Third green 155.291
CRR073307Third green 227.239
CRR073308Third green 364.387
CRR073309Second white 125.678
CRR073310Second white 286.774
CRR073311Second white 3111.782
CRR073312Silver flowering 193.408
CRR073313Silver flowering 222.221
CRR073314Silver flowering 350.601
CRR073315Gold flowering 1198.447
CRR073316Gold flowering 2186.103
CRR073317Gold flowering 3238.646
CRR073318Tawny withering 119.697
CRR073319Tawny withering 217.568
CRR073320Tawny withering 314.694