Detail information of GWHGAAZE010179


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD30006.12.1069E-82ribosomal protein S18 (chloroplast) [Lonicera japonica]
Swissprottr|A8Y9A8|RR18_LOLPR7E-4330S ribosomal protein S18, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00270}
trEMBLtr|D3WBU3|D3WBU3_LONJA8E-8330S ribosomal protein S18, chloroplastic {ECO:0000256|HAMAP-Rule:MF_00270}
TAIR10ATCG00650.11E-26ribosomal protein S18

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123905654123906079-
GWHAAZE00000002mRNA123905654123906079-
GWHAAZE00000002exon123905654123906079-
GWHAAZE00000002CDS123905654123906079-
Transcript Sequence

Network for GWHGAAZE010179

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01084.21Ribosomal_S1847935.80E-17
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02963RP-S18, MRPS18, rpsR Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.628
SRR3591706second leaf4.373
SRR3591707mature leaf13.433
SRR3591708Shoot apex3.124
SRR3591709Stem1.651
SRR3591710White floral bud1.213
SRR3591711White flower0.637
SRR3591712Green floral bud1.557
SRR3591713Yellow flower0.484
SRP173429 SRR8316895Juvenile bud stage 16.014
SRR8316896Juvenile bud stage 9.901
SRR8316897Juvenile bud stage 17.340
SRR8316894Third green stage 17.800
SRR8316900Third green stage 9.983
SRR8316901Third green stage 6.524
SRR8316898Complete white stage 5.393
SRR8316899Complete white stage 4.080
SRR8316903Complete white stage 3.689
SRR8316902Silver flowering stage7.456
SRR8316904Silver flowering stage7.949
SRR8316905Silver flowering stage6.772
SRR8316906Gold flowering stage 3.134
SRR8316907Gold flowering stage 2.471
SRR8316908Gold flowering stage 4.952
SRP132670SRR6706286Control0.533
SRR6706287Light intensity 50%0.681
SRR6706288Light intensity 20%0.744
CNP0000432CNS0095592Slightly white alabastrum(diploid) 158.692
CNS0095593Slightly white alabastrum(diploid) 243.369
CNS0095594Slightly white alabastrum(diploid) 364.197
CNS0095595Whole white alabastrum(diploid) 252.613
CNS0095596Whole white alabastrum(diploid) 341.305
CNS0095597Whole white alabastrum(diploid) 455.532
CNS0095598Silvery flower (diploied) 127.995
CNS0095599Silvery flower (diploied) 222.141
CNS0095600Silvery flower (diploied) 38.608
CNS0095601Golden flower (diploid) 125.617
CNS0095602Golden flower (diploid) 27.710
CNS0095603Golden flower (diploid) 37.113
CNS0095604Slightly white alabastrum(tetraploid) 125.727
CNS0095605Slightly white alabastrum(tetraploid) 236.403
CNS0095606Slightly white alabastrum(tetraploid) 312.025
CNS0095607Whole white alabastrum(tetraploid) 130.147
CNS0095608Whole white alabastrum(tetraploid) 240.072
CNS0095609Whole white alabastrum(tetraploid) 312.056
CNS0095610Silvery flower (tetraploid) 15.511
CNS0095611Silvery flower (tetraploid) 28.221
CNS0095612Silvery flower (tetraploid) 33.744
CNS0095613Golden flower (tetraploid) 114.000
CNS0095614Golden flower (tetraploid) 27.282
CNS0095615Golden flower (tetraploid) 38.841
CRA001975CRR073297Stem 141.118
CRR073298Stem 268.897
CRR073299Stem 331.971
CRR073300Leaf 140.013
CRR073301Leaf 255.415
CRR073302Leaf 332.856
CRR073303Juvenile bud 139.264
CRR073304Juvenile bud 225.439
CRR073305Juvenile bud 328.937
CRR073306Third green 118.355
CRR073307Third green 216.863
CRR073308Third green 325.675
CRR073309Second white 110.997
CRR073310Second white 234.749
CRR073311Second white 320.844
CRR073312Silver flowering 117.412
CRR073313Silver flowering 25.656
CRR073314Silver flowering 313.493
CRR073315Gold flowering 1285.850
CRR073316Gold flowering 2269.718
CRR073317Gold flowering 364.173
CRR073318Tawny withering 134.268
CRR073319Tawny withering 255.102
CRR073320Tawny withering 337.055