Gene detail

Detail information of GWHGAAZE010173

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD30128.1	1.22272E-83	ribosomal protein S11 (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q68RX4\|RR11_PANGI	3E-78	30S ribosomal protein S11, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01310}
trEMBL	tr\|D3WBT8\|D3WBT8_LONJA	5E-84	30S ribosomal protein S11, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01310}
TAIR10	ATCG00780.1	8E-60	ribosomal protein L14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123893999	123896073	+
GWHAAZE00000002	mRNA	123893999	123896073	+
GWHAAZE00000002	exon	123893999	123894358	+
GWHAAZE00000002	exon	123895192	123895247	+
GWHAAZE00000002	exon	123895692	123896073	+
GWHAAZE00000002	CDS	123893999	123894358	+
GWHAAZE00000002	CDS	123895192	123895247	+
GWHAAZE00000002	CDS	123895692	123896073	+

Transcript Sequence
>GWHTAAZE010185 ATGATTCAACCTCAGACCTATTTGAATGTAGCGGATAACAGCGGGGCTCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAATCGCCGATATGCTCATATTGGTGACGTTATTGTTGCTGTGATTAAAGAAGCAGTGCCAAAGATGCCCCTAGAAAGATCAGAAGTGGTCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTGACAGCGGTATGATAATACGATATGATGACAATGCTGCAGTCCTCATTGATCAAGAAGGAAATCCAAAGGGAACTCGGGTTTTTGGTGCGATTGCCGGGGAGTTGAGACAGTTAAATTTTACTAAAATAGTTTCATTAGCTCCCGAGGAAAGATCCGACGTAGTTTTATACGGATACTTCCAGGCGATAAAGTCCAAGTTGAAGAAGGGACGTTTTGGTTCACGTAAGAGTACACGCCGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCCATAATACCATTGTGACTGTTACAGATGTACGGGGTCAAGTAGTTTCTTGGTCCTCTGCCGGTACTTGTGGATTCAGAGGTAGAAGAAGAGGGACACCGTTTGCTGCTCAAACCATAGCAGGAAATGCGATTCGTACAGTAGTAGATCAAGGTATGAAACGAGCCAACGTCATGATAAAGGGTCCTGGTCTCGGAAGAGACGCAGCATTGCGAGCTATTCGCAGAAGCGGCATACTATTAACTTTCATACGTGATGTAACCCCCCTCCCACATAATGGCTGTAGACCTCCGAAAAGAAGACGTGTGTAG

Network for GWHGAAZE010173

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00238.20	Ribosomal_L14	1	120	1.80E-47
PF00411.20	Ribosomal_S11	155	264	7.30E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02874	RP-L14, MRPL14, rplN	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.026
	SRR3591706	second leaf	1.565
	SRR3591707	mature leaf	1.891
	SRR3591708	Shoot apex	2.576
	SRR3591709	Stem	0.646
	SRR3591710	White floral bud	0.562
	SRR3591711	White flower	0.486
	SRR3591712	Green floral bud	1.364
	SRR3591713	Yellow flower	0.962
SRP173429	SRR8316895	Juvenile bud stage	11.283
	SRR8316896	Juvenile bud stage	8.542
	SRR8316897	Juvenile bud stage	15.080
	SRR8316894	Third green stage	17.399
	SRR8316900	Third green stage	5.149
	SRR8316901	Third green stage	2.706
	SRR8316898	Complete white stage	3.504
	SRR8316899	Complete white stage	2.294
	SRR8316903	Complete white stage	2.967
	SRR8316902	Silver flowering stage	5.981
	SRR8316904	Silver flowering stage	6.279
	SRR8316905	Silver flowering stage	5.496
	SRR8316906	Gold flowering stage	2.044
	SRR8316907	Gold flowering stage	2.140
	SRR8316908	Gold flowering stage	2.248
SRP132670	SRR6706286	Control	0.619
	SRR6706287	Light intensity 50%	1.252
	SRR6706288	Light intensity 20%	1.133
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.381
	CNS0095593	Slightly white alabastrum(diploid) 2	17.823
	CNS0095594	Slightly white alabastrum(diploid) 3	21.900
	CNS0095595	Whole white alabastrum(diploid) 2	19.249
	CNS0095596	Whole white alabastrum(diploid) 3	17.233
	CNS0095597	Whole white alabastrum(diploid) 4	18.332
	CNS0095598	Silvery flower (diploied) 1	12.899
	CNS0095599	Silvery flower (diploied) 2	10.193
	CNS0095600	Silvery flower (diploied) 3	8.065
	CNS0095601	Golden flower (diploid) 1	10.751
	CNS0095602	Golden flower (diploid) 2	7.918
	CNS0095603	Golden flower (diploid) 3	6.770
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.756
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.858
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.140
	CNS0095610	Silvery flower (tetraploid) 1	6.030
	CNS0095611	Silvery flower (tetraploid) 2	9.417
	CNS0095612	Silvery flower (tetraploid) 3	5.840
	CNS0095613	Golden flower (tetraploid) 1	7.611
	CNS0095614	Golden flower (tetraploid) 2	6.251
	CNS0095615	Golden flower (tetraploid) 3	6.667
CRA001975	CRR073297	Stem 1	29.540
	CRR073298	Stem 2	30.428
	CRR073299	Stem 3	15.993
	CRR073300	Leaf 1	21.645
	CRR073301	Leaf 2	22.118
	CRR073302	Leaf 3	12.892
	CRR073303	Juvenile bud 1	19.059
	CRR073304	Juvenile bud 2	13.921
	CRR073305	Juvenile bud 3	17.963
	CRR073306	Third green 1	10.143
	CRR073307	Third green 2	7.155
	CRR073308	Third green 3	14.189
	CRR073309	Second white 1	7.580
	CRR073310	Second white 2	22.341
	CRR073311	Second white 3	24.663
	CRR073312	Silver flowering 1	14.006
	CRR073313	Silver flowering 2	4.510
	CRR073314	Silver flowering 3	8.435
	CRR073315	Gold flowering 1	60.392
	CRR073316	Gold flowering 2	78.527
	CRR073317	Gold flowering 3	19.514
	CRR073318	Tawny withering 1	14.477
	CRR073319	Tawny withering 2	13.615
	CRR073320	Tawny withering 3	8.664