Detail information of GWHGAAZE010172


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD29931.17.29683E-82ribosomal protein S3 (chloroplast) [Lonicera japonica]
Swissprottr|Q332T8|RR3_LACSA7E-7330S ribosomal protein S3, chloroplastic
trEMBLtr|D3WBU6|D3WBU6_LONJA3E-8230S ribosomal protein S3, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01309, ECO:0000256|RuleBase:RU003626}
TAIR10ATCG00800.19E-54structural constituent of ribosome

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123891805123892173+
GWHAAZE00000002mRNA123891805123892173+
GWHAAZE00000002exon123891805123892173+
GWHAAZE00000002CDS123891805123892173+
Transcript Sequence

Network for GWHGAAZE010172

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0205GO:0006412 translation GOslim:biological_process
map03010 Ribosome
GO:0015935 small ribosomal subunit GOslim:cellular_component
GO:0003735 structural constituent of ribosome GOslim:molecular_function
GO:0015934 large ribosomal subunit GOslim:cellular_component
GO:0019843 rRNA binding GOslim:molecular_function
map03010 Ribosome
GO:0003723 RNA binding GOslim:molecular_function
map03020 RNA polymerase
GO:0006351 transcription, DNA-templated GOslim:biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00189.21Ribosomal_S3_C351174.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02982RP-S3, rpsC Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.809
SRR3591706second leaf5.205
SRR3591707mature leaf5.254
SRR3591708Shoot apex8.982
SRR3591709Stem3.906
SRR3591710White floral bud2.408
SRR3591711White flower3.216
SRR3591712Green floral bud3.157
SRR3591713Yellow flower3.336
SRP173429 SRR8316895Juvenile bud stage 19.690
SRR8316896Juvenile bud stage 11.032
SRR8316897Juvenile bud stage 21.476
SRR8316894Third green stage 23.800
SRR8316900Third green stage 6.093
SRR8316901Third green stage 5.089
SRR8316898Complete white stage 6.545
SRR8316899Complete white stage 3.407
SRR8316903Complete white stage 8.227
SRR8316902Silver flowering stage9.935
SRR8316904Silver flowering stage12.231
SRR8316905Silver flowering stage10.457
SRR8316906Gold flowering stage 3.024
SRR8316907Gold flowering stage 2.738
SRR8316908Gold flowering stage 5.750
SRP132670SRR6706286Control0.380
SRR6706287Light intensity 50%0.421
SRR6706288Light intensity 20%0.281
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.804
CNS0095593Slightly white alabastrum(diploid) 218.182
CNS0095594Slightly white alabastrum(diploid) 324.959
CNS0095595Whole white alabastrum(diploid) 221.852
CNS0095596Whole white alabastrum(diploid) 318.825
CNS0095597Whole white alabastrum(diploid) 419.996
CNS0095598Silvery flower (diploied) 115.933
CNS0095599Silvery flower (diploied) 212.967
CNS0095600Silvery flower (diploied) 310.667
CNS0095601Golden flower (diploid) 115.193
CNS0095602Golden flower (diploid) 29.620
CNS0095603Golden flower (diploid) 38.788
CNS0095604Slightly white alabastrum(tetraploid) 124.222
CNS0095605Slightly white alabastrum(tetraploid) 220.623
CNS0095606Slightly white alabastrum(tetraploid) 315.667
CNS0095607Whole white alabastrum(tetraploid) 114.131
CNS0095608Whole white alabastrum(tetraploid) 218.813
CNS0095609Whole white alabastrum(tetraploid) 312.280
CNS0095610Silvery flower (tetraploid) 19.030
CNS0095611Silvery flower (tetraploid) 212.464
CNS0095612Silvery flower (tetraploid) 37.848
CNS0095613Golden flower (tetraploid) 110.453
CNS0095614Golden flower (tetraploid) 27.128
CNS0095615Golden flower (tetraploid) 313.250
CRA001975CRR073297Stem 110.032
CRR073298Stem 215.382
CRR073299Stem 34.970
CRR073300Leaf 17.623
CRR073301Leaf 29.391
CRR073302Leaf 37.167
CRR073303Juvenile bud 17.401
CRR073304Juvenile bud 22.774
CRR073305Juvenile bud 33.856
CRR073306Third green 13.242
CRR073307Third green 21.502
CRR073308Third green 33.944
CRR073309Second white 13.053
CRR073310Second white 211.853
CRR073311Second white 311.611
CRR073312Silver flowering 15.396
CRR073313Silver flowering 23.417
CRR073314Silver flowering 34.977
CRR073315Gold flowering 128.300
CRR073316Gold flowering 227.385
CRR073317Gold flowering 38.544
CRR073318Tawny withering 19.539
CRR073319Tawny withering 28.529
CRR073320Tawny withering 36.493