Detail information of GWHGAAZE010163


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31287.11.6308E-118NADH-plastoquinone oxidoreductase subunit I protein (chloroplast) [Lonicera japonica]
Swissprottr|Q8HVM2|NDHI_PSIGN4E-115NAD(P)H-quinone oxidoreductase subunit I, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01351}
trEMBLtr|D3WBP5|D3WBP5_LONJA6E-119NAD(P)H-quinone oxidoreductase subunit I, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01351, ECO:0000256|SAAS:SAAS00064212}
TAIR10ATCG01090.13E-85NADPH dehydrogenases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123862562123863059-
GWHAAZE00000002mRNA123862562123863059-
GWHAAZE00000002exon123862562123863059-
GWHAAZE00000002CDS123862562123863059-
Transcript Sequence

Network for GWHGAAZE010163

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13187.7Fer4_9631184.10E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05580ndhI Metabolic pathways map01100
Oxidative phosphorylationmap00190

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016020cellular_componentmembrane
GO:0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
GO:0051539molecular_function4 iron, 4 sulfur cluster binding
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.388
SRR3591706second leaf3.679
SRR3591707mature leaf2.060
SRR3591708Shoot apex1.344
SRR3591709Stem0.465
SRR3591710White floral bud0.111
SRR3591711White flower0.050
SRR3591712Green floral bud0.452
SRR3591713Yellow flower0.324
SRP173429 SRR8316895Juvenile bud stage 5.158
SRR8316896Juvenile bud stage 2.226
SRR8316897Juvenile bud stage 9.305
SRR8316894Third green stage 9.732
SRR8316900Third green stage 0.723
SRR8316901Third green stage 0.848
SRR8316898Complete white stage 1.141
SRR8316899Complete white stage 0.564
SRR8316903Complete white stage 1.224
SRR8316902Silver flowering stage3.728
SRR8316904Silver flowering stage3.801
SRR8316905Silver flowering stage2.704
SRR8316906Gold flowering stage 0.556
SRR8316907Gold flowering stage 0.142
SRR8316908Gold flowering stage 0.464
SRP132670SRR6706286Control0.093
SRR6706287Light intensity 50%0.066
SRR6706288Light intensity 20%0.167
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.098
CNS0095593Slightly white alabastrum(diploid) 21.657
CNS0095594Slightly white alabastrum(diploid) 33.210
CNS0095595Whole white alabastrum(diploid) 23.172
CNS0095596Whole white alabastrum(diploid) 34.877
CNS0095597Whole white alabastrum(diploid) 44.490
CNS0095598Silvery flower (diploied) 13.496
CNS0095599Silvery flower (diploied) 22.031
CNS0095600Silvery flower (diploied) 31.646
CNS0095601Golden flower (diploid) 12.352
CNS0095602Golden flower (diploid) 21.294
CNS0095603Golden flower (diploid) 31.445
CNS0095604Slightly white alabastrum(tetraploid) 13.275
CNS0095605Slightly white alabastrum(tetraploid) 21.955
CNS0095606Slightly white alabastrum(tetraploid) 31.087
CNS0095607Whole white alabastrum(tetraploid) 10.437
CNS0095608Whole white alabastrum(tetraploid) 21.548
CNS0095609Whole white alabastrum(tetraploid) 31.481
CNS0095610Silvery flower (tetraploid) 10.977
CNS0095611Silvery flower (tetraploid) 21.382
CNS0095612Silvery flower (tetraploid) 31.135
CNS0095613Golden flower (tetraploid) 11.431
CNS0095614Golden flower (tetraploid) 21.510
CNS0095615Golden flower (tetraploid) 31.547
CRA001975CRR073297Stem 11.623
CRR073298Stem 21.711
CRR073299Stem 30.810
CRR073300Leaf 10.406
CRR073301Leaf 20.885
CRR073302Leaf 31.022
CRR073303Juvenile bud 10.904
CRR073304Juvenile bud 20.575
CRR073305Juvenile bud 30.978
CRR073306Third green 10.460
CRR073307Third green 20.066
CRR073308Third green 30.531
CRR073309Second white 10.847
CRR073310Second white 22.711
CRR073311Second white 32.355
CRR073312Silver flowering 12.668
CRR073313Silver flowering 20.839
CRR073314Silver flowering 31.198
CRR073315Gold flowering 12.434
CRR073316Gold flowering 24.977
CRR073317Gold flowering 31.860
CRR073318Tawny withering 11.410
CRR073319Tawny withering 20.826
CRR073320Tawny withering 30.285